/tmp/ipykernel_3071/2802220519.py:3: DeprecationWarning: Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0), (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries) but was not found to be installed on your system. If this would cause problems for you, please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466 import pandas as pd
OBO Foundry dashboard analysis¶
/usr/local/lib/python3.10/dist-packages/plotly/express/_core.py:2044: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. /usr/local/lib/python3.10/dist-packages/plotly/express/_core.py:2065: FutureWarning: When grouping with a length-1 list-like, you will need to pass a length-1 tuple to get_group in a future version of pandas. Pass `(name,)` instead of `name` to silence this warning.
Ontologies by number of axioms
Ontologies by number of classes
Ontologies by how many ontologies use it
Different serialisations used
syntax RDF/XML Syntax 179 unknown 3 OWL/XML Syntax 1 Name: count, dtype: int64
Breakdown of used Axiom Types
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
AnnotationAssertion | 180 | 165416.683060 | 860976.207216 | 0.0 | 1649.0 | 7738.0 | 32436.0 | 10430503.0 |
Declaration | 180 | 31059.896175 | 197659.088910 | 0.0 | 475.5 | 1343.0 | 5348.0 | 2544579.0 |
SubClassOf | 175 | 42212.551913 | 226360.961404 | 0.0 | 383.0 | 1759.0 | 6780.5 | 2544547.0 |
EquivalentClasses | 129 | 2807.491803 | 14156.779018 | 0.0 | 0.0 | 20.0 | 229.5 | 127926.0 |
SubAnnotationPropertyOf | 114 | 9.688525 | 20.867089 | 0.0 | 0.0 | 2.0 | 8.5 | 175.0 |
TransitiveObjectProperty | 110 | 5.601093 | 9.696459 | 0.0 | 0.0 | 1.0 | 6.0 | 58.0 |
SubObjectPropertyOf | 101 | 38.513661 | 88.192961 | 0.0 | 0.0 | 2.0 | 31.0 | 700.0 |
DisjointClasses | 95 | 32.879781 | 122.127284 | 0.0 | 0.0 | 1.0 | 21.0 | 1245.0 |
ObjectPropertyRange | 82 | 13.814208 | 25.560710 | 0.0 | 0.0 | 0.0 | 18.0 | 146.0 |
ObjectPropertyDomain | 81 | 14.147541 | 26.575935 | 0.0 | 0.0 | 0.0 | 18.0 | 151.0 |
InverseObjectProperties | 79 | 8.781421 | 16.435899 | 0.0 | 0.0 | 0.0 | 13.0 | 113.0 |
ClassAssertion | 67 | 88.896175 | 524.831585 | 0.0 | 0.0 | 0.0 | 18.0 | 5528.0 |
SubPropertyChainOf | 65 | 9.830601 | 25.836101 | 0.0 | 0.0 | 0.0 | 2.0 | 148.0 |
FunctionalObjectProperty | 50 | 0.825137 | 1.690966 | 0.0 | 0.0 | 0.0 | 1.0 | 9.0 |
SymmetricObjectProperty | 46 | 1.333333 | 6.612786 | 0.0 | 0.0 | 0.0 | 0.5 | 86.0 |
DifferentIndividuals | 42 | 0.863388 | 6.082575 | 0.0 | 0.0 | 0.0 | 0.0 | 82.0 |
DataPropertyRange | 42 | 1.240437 | 3.695424 | 0.0 | 0.0 | 0.0 | 0.0 | 30.0 |
IrrefexiveObjectProperty | 40 | 0.480874 | 1.325330 | 0.0 | 0.0 | 0.0 | 0.0 | 9.0 |
DataPropertyDomain | 39 | 1.125683 | 3.232824 | 0.0 | 0.0 | 0.0 | 0.0 | 32.0 |
InverseFunctionalObjectProperty | 35 | 0.234973 | 0.559121 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 |
AnnotationPropertyRangeOf | 35 | 1.377049 | 10.634534 | 0.0 | 0.0 | 0.0 | 0.0 | 140.0 |
SubDataPropertyOf | 31 | 0.918033 | 3.637239 | 0.0 | 0.0 | 0.0 | 0.0 | 33.0 |
EquivalentObjectProperties | 31 | 1.524590 | 5.605942 | 0.0 | 0.0 | 0.0 | 0.0 | 36.0 |
Rule | 29 | 2.120219 | 6.541228 | 0.0 | 0.0 | 0.0 | 0.0 | 31.0 |
FunctionalDataProperty | 24 | 0.491803 | 1.557925 | 0.0 | 0.0 | 0.0 | 0.0 | 11.0 |
AsymmetricObjectProperty | 20 | 0.393443 | 1.702732 | 0.0 | 0.0 | 0.0 | 0.0 | 18.0 |
ObjectPropertyAssertion | 15 | 20.754098 | 156.056343 | 0.0 | 0.0 | 0.0 | 0.0 | 1515.0 |
DisjointObjectProperties | 13 | 0.163934 | 0.867870 | 0.0 | 0.0 | 0.0 | 0.0 | 10.0 |
ReflexiveObjectProperty | 10 | 0.103825 | 0.474789 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 |
AnnotationPropertyDomain | 8 | 0.169399 | 1.394157 | 0.0 | 0.0 | 0.0 | 0.0 | 17.0 |
DisjointUnion | 5 | 0.054645 | 0.415718 | 0.0 | 0.0 | 0.0 | 0.0 | 5.0 |
DataPropertyAssertion | 4 | 0.065574 | 0.616678 | 0.0 | 0.0 | 0.0 | 0.0 | 8.0 |
DatatypeDefinition | 2 | 0.109290 | 1.406059 | 0.0 | 0.0 | 0.0 | 0.0 | 19.0 |
Breakdown of used OWL Class Expression constructs
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
Class | 179 | 128191.158470 | 665134.136753 | 0.0 | 1470.5 | 6003.0 | 22149.5 | 7633643.0 |
ObjectSomeValuesFrom | 158 | 18765.688525 | 93514.766642 | 0.0 | 32.5 | 480.0 | 3084.0 | 892981.0 |
ObjectIntersectionOf | 122 | 4397.382514 | 21743.177193 | 0.0 | 0.0 | 28.0 | 479.0 | 225781.0 |
ObjectUnionOf | 85 | 22.311475 | 71.807023 | 0.0 | 0.0 | 0.0 | 11.5 | 767.0 |
ObjectAllValuesFrom | 69 | 26.874317 | 148.958179 | 0.0 | 0.0 | 0.0 | 6.0 | 1764.0 |
ObjectComplementOf | 63 | 15.978142 | 97.678940 | 0.0 | 0.0 | 0.0 | 2.0 | 1132.0 |
ObjectMinCardinality | 60 | 2.256831 | 7.950717 | 0.0 | 0.0 | 0.0 | 1.0 | 59.0 |
ObjectOneOf | 49 | 3.781421 | 28.625975 | 0.0 | 0.0 | 0.0 | 1.0 | 275.0 |
ObjectExactCardinality | 46 | 10.054645 | 93.004651 | 0.0 | 0.0 | 0.0 | 0.5 | 1251.0 |
DataMinCardinality | 26 | 0.240437 | 0.677020 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 |
DataExactCardinality | 22 | 0.546448 | 1.649767 | 0.0 | 0.0 | 0.0 | 0.0 | 7.0 |
DataSomeValuesFrom | 22 | 6.874317 | 64.428089 | 0.0 | 0.0 | 0.0 | 0.0 | 859.0 |
DataHasValue | 19 | 125.453552 | 1574.605440 | 0.0 | 0.0 | 0.0 | 0.0 | 21288.0 |
ObjectHasValue | 17 | 229.038251 | 1934.103507 | 0.0 | 0.0 | 0.0 | 0.0 | 21288.0 |
ObjectMaxCardinality | 17 | 0.573770 | 3.410354 | 0.0 | 0.0 | 0.0 | 0.0 | 41.0 |
ObjectHasSelf | 15 | 0.163934 | 0.737839 | 0.0 | 0.0 | 0.0 | 0.0 | 6.0 |
DataMaxCardinality | 2 | 0.010929 | 0.104254 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
DataAllValuesFrom | 1 | 0.027322 | 0.369611 | 0.0 | 0.0 | 0.0 | 0.0 | 5.0 |
OBO Score (Experimental)
ontology | score | score_dash | score_impact | |
---|---|---|---|---|
20 | omo | 0.925 | 0.889 | 0.962 |
26 | ro | 0.858 | 0.956 | 0.760 |
42 | bfo | 0.801 | 0.822 | 0.781 |
9 | go | 0.720 | 0.949 | 0.492 |
23 | pato | 0.716 | 0.956 | 0.475 |
18 | obi | 0.704 | 0.971 | 0.437 |
29 | uberon | 0.668 | 0.949 | 0.388 |
15 | ncbitaxon | 0.641 | 0.889 | 0.393 |
1 | cl | 0.627 | 0.949 | 0.306 |
25 | pr | 0.561 | 0.876 | 0.246 |
6 | envo | 0.559 | 0.949 | 0.169 |
3 | doid | 0.537 | 0.949 | 0.126 |
7 | fbdv | 0.504 | 0.993 | 0.016 |
48 | chebi | 0.504 | 0.593 | 0.415 |
117 | nbo | 0.504 | 0.882 | 0.126 |
12 | mondo | 0.504 | 0.949 | 0.060 |
13 | mp | 0.502 | 0.956 | 0.049 |
34 | wbphenotype | 0.502 | 0.993 | 0.011 |
27 | symp | 0.496 | 0.949 | 0.044 |
16 | oba | 0.494 | 0.956 | 0.033 |
24 | plana | 0.494 | 0.978 | 0.011 |
0 | apollo_sv | 0.493 | 0.882 | 0.104 |
90 | hp | 0.493 | 0.867 | 0.120 |
5 | eco | 0.488 | 0.971 | 0.005 |
10 | hancestro | 0.482 | 0.949 | 0.016 |
19 | obib | 0.479 | 0.920 | 0.038 |
30 | vbo | 0.478 | 0.956 | 0.000 |
31 | vo | 0.476 | 0.882 | 0.071 |
28 | trans | 0.474 | 0.920 | 0.027 |
4 | dpo | 0.474 | 0.949 | 0.000 |
126 | ogms | 0.473 | 0.711 | 0.235 |
171 | wbls | 0.469 | 0.927 | 0.011 |
132 | omrse | 0.468 | 0.838 | 0.098 |
8 | gno | 0.466 | 0.927 | 0.005 |
45 | caro | 0.465 | 0.733 | 0.197 |
22 | opl | 0.464 | 0.911 | 0.016 |
102 | maxo | 0.463 | 0.904 | 0.022 |
70 | ecto | 0.460 | 0.904 | 0.016 |
21 | ontoavida | 0.460 | 0.920 | 0.000 |
66 | dron | 0.457 | 0.838 | 0.077 |
17 | obcs | 0.452 | 0.882 | 0.022 |
85 | geno | 0.452 | 0.882 | 0.022 |
32 | vt | 0.449 | 0.882 | 0.016 |
2 | disdriv | 0.445 | 0.889 | 0.000 |
144 | phipo | 0.444 | 0.882 | 0.005 |
141 | pco | 0.444 | 0.778 | 0.109 |
75 | fbbt | 0.442 | 0.867 | 0.016 |
14 | mro | 0.441 | 0.882 | 0.000 |
76 | fbcv | 0.441 | 0.860 | 0.022 |
11 | iao | 0.438 | 0.876 | 0.000 |
37 | aism | 0.438 | 0.860 | 0.016 |
64 | ddpheno | 0.436 | 0.867 | 0.005 |
170 | wbbt | 0.435 | 0.860 | 0.011 |
33 | vto | 0.433 | 0.867 | 0.000 |
136 | oostt | 0.432 | 0.853 | 0.011 |
47 | cdno | 0.430 | 0.860 | 0.000 |
146 | po | 0.429 | 0.771 | 0.087 |
177 | zfa | 0.427 | 0.838 | 0.016 |
179 | zp | 0.427 | 0.844 | 0.011 |
69 | ecocore | 0.424 | 0.838 | 0.011 |
145 | planp | 0.413 | 0.822 | 0.005 |
82 | fypo | 0.413 | 0.822 | 0.005 |
140 | pcl | 0.411 | 0.822 | 0.000 |
36 | agro | 0.410 | 0.816 | 0.005 |
59 | colao | 0.408 | 0.816 | 0.000 |
100 | lepao | 0.408 | 0.816 | 0.000 |
124 | occo | 0.408 | 0.816 | 0.000 |
83 | gecko | 0.403 | 0.800 | 0.005 |
176 | zeco | 0.400 | 0.800 | 0.000 |
77 | fideo | 0.400 | 0.800 | 0.000 |
175 | xpo | 0.399 | 0.793 | 0.005 |
58 | cob | 0.397 | 0.756 | 0.038 |
95 | ico | 0.397 | 0.749 | 0.044 |
51 | chmo | 0.396 | 0.742 | 0.049 |
162 | swo | 0.394 | 0.771 | 0.016 |
115 | mpio | 0.392 | 0.778 | 0.005 |
96 | ido | 0.390 | 0.660 | 0.120 |
104 | mcro | 0.390 | 0.780 | 0.000 |
153 | rbo | 0.388 | 0.771 | 0.005 |
41 | bco | 0.388 | 0.771 | 0.005 |
120 | ngbo | 0.382 | 0.764 | 0.000 |
113 | mop | 0.382 | 0.742 | 0.022 |
67 | duo | 0.380 | 0.749 | 0.011 |
43 | bspo | 0.377 | 0.660 | 0.093 |
155 | rxno | 0.377 | 0.749 | 0.005 |
168 | uo | 0.371 | 0.578 | 0.164 |
129 | ohpi | 0.371 | 0.742 | 0.000 |
128 | ohmi | 0.369 | 0.733 | 0.005 |
63 | ddanat | 0.369 | 0.727 | 0.011 |
81 | fovt | 0.366 | 0.733 | 0.000 |
143 | peco | 0.366 | 0.711 | 0.022 |
49 | cheminf | 0.366 | 0.733 | 0.000 |
68 | ecao | 0.366 | 0.733 | 0.000 |
118 | ncit | 0.365 | 0.593 | 0.137 |
72 | epio | 0.363 | 0.727 | 0.000 |
35 | ado | 0.363 | 0.727 | 0.000 |
149 | proco | 0.360 | 0.720 | 0.000 |
150 | psdo | 0.360 | 0.720 | 0.000 |
46 | cdao | 0.358 | 0.711 | 0.005 |
161 | stato | 0.357 | 0.622 | 0.093 |
50 | chiro | 0.355 | 0.711 | 0.000 |
165 | to | 0.354 | 0.704 | 0.005 |
71 | emapa | 0.354 | 0.704 | 0.005 |
54 | clao | 0.354 | 0.704 | 0.005 |
164 | taxrank | 0.350 | 0.689 | 0.011 |
62 | cto | 0.345 | 0.684 | 0.005 |
73 | exo | 0.344 | 0.660 | 0.027 |
61 | cteno | 0.344 | 0.689 | 0.000 |
60 | cro | 0.344 | 0.689 | 0.000 |
44 | bto | 0.336 | 0.638 | 0.033 |
138 | ornaseq | 0.334 | 0.667 | 0.000 |
39 | apo | 0.334 | 0.667 | 0.000 |
98 | kisao | 0.334 | 0.667 | 0.000 |
65 | dideo | 0.333 | 0.660 | 0.005 |
169 | upheno | 0.333 | 0.638 | 0.027 |
163 | t4fs | 0.330 | 0.660 | 0.000 |
74 | fao | 0.330 | 0.644 | 0.016 |
80 | foodon | 0.329 | 0.587 | 0.071 |
158 | sepio | 0.328 | 0.644 | 0.011 |
148 | ppo | 0.327 | 0.653 | 0.000 |
89 | hom | 0.322 | 0.644 | 0.000 |
157 | scdo | 0.322 | 0.638 | 0.005 |
53 | cio | 0.322 | 0.644 | 0.000 |
38 | amphx | 0.322 | 0.644 | 0.000 |
123 | oarcs | 0.322 | 0.644 | 0.000 |
151 | pso | 0.322 | 0.644 | 0.000 |
99 | labo | 0.319 | 0.638 | 0.000 |
147 | poro | 0.319 | 0.638 | 0.000 |
79 | fobi | 0.316 | 0.631 | 0.000 |
137 | opmi | 0.316 | 0.593 | 0.038 |
84 | genepio | 0.313 | 0.593 | 0.033 |
159 | so | 0.312 | 0.444 | 0.180 |
103 | mco | 0.311 | 0.622 | 0.000 |
101 | ma | 0.311 | 0.622 | 0.000 |
109 | miapa | 0.308 | 0.616 | 0.000 |
86 | geo | 0.307 | 0.571 | 0.044 |
105 | mf | 0.307 | 0.571 | 0.044 |
52 | cido | 0.302 | 0.600 | 0.005 |
125 | ogg | 0.302 | 0.549 | 0.055 |
156 | sbo | 0.302 | 0.600 | 0.005 |
88 | hao | 0.300 | 0.600 | 0.000 |
122 | oae | 0.293 | 0.504 | 0.082 |
142 | pdro | 0.293 | 0.571 | 0.016 |
172 | xao | 0.293 | 0.571 | 0.016 |
56 | clyh | 0.289 | 0.578 | 0.000 |
78 | flopo | 0.288 | 0.571 | 0.005 |
174 | xlmod | 0.285 | 0.571 | 0.000 |
57 | cmo | 0.285 | 0.520 | 0.049 |
178 | zfs | 0.284 | 0.556 | 0.011 |
91 | hsapdv | 0.280 | 0.533 | 0.027 |
119 | ncro | 0.280 | 0.549 | 0.011 |
92 | hso | 0.275 | 0.549 | 0.000 |
87 | gsso | 0.275 | 0.527 | 0.022 |
106 | mfoem | 0.274 | 0.542 | 0.005 |
110 | mmo | 0.272 | 0.527 | 0.016 |
173 | xco | 0.272 | 0.527 | 0.016 |
152 | pw | 0.268 | 0.520 | 0.016 |
114 | mpath | 0.267 | 0.489 | 0.044 |
111 | mmusdv | 0.267 | 0.533 | 0.000 |
116 | ms | 0.266 | 0.520 | 0.011 |
130 | omit | 0.266 | 0.498 | 0.033 |
127 | ohd | 0.264 | 0.527 | 0.000 |
134 | ons | 0.264 | 0.511 | 0.016 |
154 | rs | 0.263 | 0.520 | 0.005 |
167 | txpo | 0.263 | 0.520 | 0.005 |
166 | tto | 0.256 | 0.511 | 0.000 |
135 | ontoneo | 0.252 | 0.504 | 0.000 |
121 | nomen | 0.252 | 0.504 | 0.000 |
108 | mi | 0.245 | 0.467 | 0.022 |
131 | omp | 0.242 | 0.467 | 0.016 |
40 | aro | 0.242 | 0.467 | 0.016 |
97 | ino | 0.241 | 0.460 | 0.022 |
55 | clo | 0.236 | 0.400 | 0.071 |
107 | mfomd | 0.233 | 0.444 | 0.022 |
133 | one | 0.230 | 0.460 | 0.000 |
93 | htn | 0.230 | 0.460 | 0.000 |
94 | iceo | 0.230 | 0.460 | 0.000 |
112 | mod | 0.202 | 0.393 | 0.011 |
160 | spd | 0.200 | 0.400 | 0.000 |
139 | ovae | 0.197 | 0.393 | 0.000 |
180 | cvdo | 0.000 | 0.000 | 0.000 |
181 | olatdv | 0.000 | 0.000 | 0.000 |
182 | pdumdv | 0.000 | 0.000 | 0.000 |
OBO Score Summary
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
score | 183.0 | 0.379333 | 0.125604 | 0.0 | 0.3045 | 0.366 | 0.443 | 0.925 |
score_dash | 183.0 | 0.704940 | 0.182035 | 0.0 | 0.5780 | 0.711 | 0.860 | 0.993 |
score_impact | 183.0 | 0.053710 | 0.134007 | 0.0 | 0.0000 | 0.011 | 0.033 | 0.962 |