ROBOT Report - apollo_sv

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Types of errors

LevelNumber of errors
WARN111
INFO60

Error breakdown

RuleNumber of errors
lowercase_definition60
missing_definition58
annotation_whitespace31
missing_obsolete_label20
duplicate_label_synonym1
equivalent_class_axiom_no_genus1

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Row Level Rule Name Subject Property Value
0 WARN annotation_whitespace APOLLO_SV:00000012 IAO:0000600 A number of time step units in a time step of a simulation. For example, if the time step is 6 hours, then this value is 6. @en
1 WARN annotation_whitespace APOLLO_SV:00000015 IAO:0000600 The number of time steps in a simulator run. For example, if run length is 10 and the time step is 6 hours, then the simulator will simulate a 60-hour period that begins at simulator time zero. @en
2 WARN annotation_whitespace APOLLO_SV:00000017 IAO:0000600 A period during which an organism of a particular species, who is infected with a particular pathogen, is not yet able to infect susceptible organisms of a particular species. Note that the susceptible and infected organisms can be of different species. @en
3 WARN annotation_whitespace APOLLO_SV:00000022 IAO:0000600 The number of simulated organisms in a simulated population. The number does not have to be an integer. @en
4 WARN annotation_whitespace APOLLO_SV:00000023 IAO:0000600 A vaccination schedule specifies the intended timing of initial and subsequent booster doses of vaccine for an individual organism. @en
5 WARN annotation_whitespace APOLLO_SV:00000029 IAO:0000115 A process that is applied to a population with the goal of preventing, or mitigating the severity of an infectious disease. @en
6 WARN annotation_whitespace APOLLO_SV:00000029 IAO:0000600 A process that is applied to a population with the goal of preventing, or mitigating the severity of an infectious disease. @en
7 WARN annotation_whitespace APOLLO_SV:00000041 IAO:0000115 A simulated organism in a simulated population that is not susceptible. @en
8 WARN annotation_whitespace APOLLO_SV:00000041 IAO:0000600 A simulated organism in a simulated population that is neither susceptible, exposed, nor infectious for a particular simulated disease. Note that the name for this concept, were it to be named based on its intent, would be ‘immune.’ However, in the practice domain of epidemiology this concept is traditionally termed ‘recovered.’ The problem with the traditional name is that organisms can be considered ‘recovered’ by virtue of having been vaccinated, which differs from lay usage. @en
9 WARN annotation_whitespace APOLLO_SV:00000043 IAO:0000115 The average value of transmissions of the infectious agent from one infected organism to another, resulting in an infection. @en
10 WARN annotation_whitespace APOLLO_SV:00000049 IAO:0000115 The value of the time interval between an organism's taking antivirals against a specific infectious agent and the organism’s losing its infectious agent host role. @en
11 WARN annotation_whitespace APOLLO_SV:00000049 IAO:0000600 The duration of time (expressed in time steps) between initiation of a particular antiviral treatment to an organism and when the organism becomes non infectious or, if the antiviral is being administered prophylactically, protected from infection. @en
12 WARN annotation_whitespace APOLLO_SV:00000050 IAO:0000600 The fraction of individuals in a simulated population that will accept antiviral treatment if offered. @en
13 WARN annotation_whitespace APOLLO_SV:00000051 IAO:0000115 An action specification giving the number of doses of an antiviral to be made available during a specific time interval. @en
14 WARN annotation_whitespace APOLLO_SV:00000057 IAO:0000115 A relation between to particulars such that aRb where b can be any kind of entity while the second is a universal. b instantiates a at some times. @en
15 WARN annotation_whitespace APOLLO_SV:00000060 IAO:0000115 The simulation of an antiviral control measure.
16 WARN annotation_whitespace APOLLO_SV:00000070 IAO:0000115 A purely intentional entity that simulates an entity and its properties. @en
17 WARN annotation_whitespace APOLLO_SV:00000070 IAO:0000600 A purely intentional entity that simulates an entity and its properties. @en
18 WARN annotation_whitespace APOLLO_SV:00000084 IAO:0000600 A control strategy dose schedule specifies the intended timing of initial and subsequent doses of for example a vaccine or an antiviral for an individual organism. @en
19 WARN annotation_whitespace APOLLO_SV:00000097 IAO:0000115 The sum of all biotic and abiotic entities in a geographical region. @en
20 WARN annotation_whitespace APOLLO_SV:00000097 IAO:0000600 The sum of all biotic and abiotic entities in a geographical region. @en
21 WARN annotation_whitespace APOLLO_SV:00000115 IAO:0000600 A process where a susceptible organism from a particular species becomes infected by a particular pathogen. The infection is acquired from an infected organism of a particular species or from a contaminated thing. Note that the susceptible and infectious organisms can be of different species. @en
22 WARN annotation_whitespace APOLLO_SV:00000131 IAO:0000600 A fraction of the population known to have undergone a specific event that results in starting or stopping an infectious disease control strategy. The event could be infection acquisition, vaccination, antiviral treatment, etc. @en
23 WARN annotation_whitespace APOLLO_SV:00000137 IAO:0000600 the number of distinct antigenic strains in a vaccine product @en
24 WARN annotation_whitespace APOLLO_SV:00000215 IAO:0000115 An information content entity that assigns a probability to each measurable subset of the possible outcomes of a random experiment, survey, or procedure of statistical inference. @en
25 WARN annotation_whitespace APOLLO_SV:00000215 IAO:0000600 An information content entity that assigns a probability to each measurable subset of the possible outcomes of a random experiment, survey, or procedure of statistical inference. @en
26 WARN annotation_whitespace APOLLO_SV:00000265 IAO:0000600 An infection acquisition from an individual who is infectious. The individual acquiring the infection can be of a different species than the one who is infectious. @en
27 WARN annotation_whitespace APOLLO_SV:00000268 IAO:0000600 A system of measurement of time with respect to an arbitrary reference point or event, which typically has a measured value of zero elapsed time. In epidemic simulation, it can be 'simulator time' where time zero is the starting point of an infectious disease scenario, or it can be 'control strategy time' where time zero is the time at which the control strategy is initiated. @en
28 WARN annotation_whitespace APOLLO_SV:00000292 IAO:0000600 The unit of measure for the supply schedule of an individual treatment. For example, 'daily dose'. @en
29 WARN annotation_whitespace APOLLO_SV:00000296 IAO:0000600 A specification of the criteria an organism must meet to be considered to be in some abnormal state. The abnormal state could be having a disease, carrier status, a syndrome, a structural abnormality (e.g., congenital heart defect), and so on. @en
30 WARN annotation_whitespace APOLLO_SV:00000319 IAO:0000118 National Library of Medicine Identifier @en
31 WARN duplicate_label_synonym APOLLO_SV:00000595 IAO:0000118 treatment facility census@en
32 WARN equivalent_class_axiom_no_genus APOLLO_SV:00000560 IAO:0000136 APOLLO_SV:00000298
33 WARN missing_definition APOLLO_SV:00000018 IAO:0000115
34 WARN missing_definition APOLLO_SV:00000019 IAO:0000115
35 WARN missing_definition APOLLO_SV:00000020 IAO:0000115
36 WARN missing_definition APOLLO_SV:00000021 IAO:0000115
37 WARN missing_definition APOLLO_SV:00000027 IAO:0000115
38 WARN missing_definition APOLLO_SV:00000030 IAO:0000115
39 WARN missing_definition APOLLO_SV:00000034 IAO:0000115
40 WARN missing_definition APOLLO_SV:00000044 IAO:0000115
41 WARN missing_definition APOLLO_SV:00000056 IAO:0000115
42 WARN missing_definition APOLLO_SV:00000062 IAO:0000115
43 WARN missing_definition APOLLO_SV:00000102 IAO:0000115
44 WARN missing_definition APOLLO_SV:00000110 IAO:0000115
45 WARN missing_definition APOLLO_SV:00000118 IAO:0000115
46 WARN missing_definition APOLLO_SV:00000132 IAO:0000115
47 WARN missing_definition APOLLO_SV:00000140 IAO:0000115
48 WARN missing_definition APOLLO_SV:00000141 IAO:0000115
49 WARN missing_definition APOLLO_SV:00000144 IAO:0000115
50 WARN missing_definition APOLLO_SV:00000158 IAO:0000115
51 WARN missing_definition APOLLO_SV:00000163 IAO:0000115
52 WARN missing_definition APOLLO_SV:00000168 IAO:0000115
53 WARN missing_definition APOLLO_SV:00000169 IAO:0000115
54 WARN missing_definition APOLLO_SV:00000170 IAO:0000115
55 WARN missing_definition APOLLO_SV:00000176 IAO:0000115
56 WARN missing_definition APOLLO_SV:00000182 IAO:0000115
57 WARN missing_definition APOLLO_SV:00000196 IAO:0000115
58 WARN missing_definition APOLLO_SV:00000197 IAO:0000115
59 WARN missing_definition APOLLO_SV:00000200 IAO:0000115
60 WARN missing_definition APOLLO_SV:00000202 IAO:0000115
61 WARN missing_definition APOLLO_SV:00000236 IAO:0000115
62 WARN missing_definition APOLLO_SV:00000250 IAO:0000115
63 WARN missing_definition APOLLO_SV:00000251 IAO:0000115
64 WARN missing_definition APOLLO_SV:00000252 IAO:0000115
65 WARN missing_definition APOLLO_SV:00000253 IAO:0000115
66 WARN missing_definition APOLLO_SV:00000273 IAO:0000115
67 WARN missing_definition APOLLO_SV:00000274 IAO:0000115
68 WARN missing_definition APOLLO_SV:00000275 IAO:0000115
69 WARN missing_definition APOLLO_SV:00000276 IAO:0000115
70 WARN missing_definition APOLLO_SV:00000288 IAO:0000115
71 WARN missing_definition APOLLO_SV:00000289 IAO:0000115
72 WARN missing_definition APOLLO_SV:00000307 IAO:0000115
73 WARN missing_definition APOLLO_SV:00000319 IAO:0000115
74 WARN missing_definition APOLLO_SV:00000320 IAO:0000115
75 WARN missing_definition APOLLO_SV:00000321 IAO:0000115
76 WARN missing_definition APOLLO_SV:00000324 IAO:0000115
77 WARN missing_definition APOLLO_SV:00000329 IAO:0000115
78 WARN missing_definition APOLLO_SV:00000385 IAO:0000115
79 WARN missing_definition APOLLO_SV:00000386 IAO:0000115
80 WARN missing_definition APOLLO_SV:00000395 IAO:0000115
81 WARN missing_definition APOLLO_SV:00000488 IAO:0000115
82 WARN missing_definition APOLLO_SV:00000561 IAO:0000115
83 WARN missing_definition APOLLO_SV:00000562 IAO:0000115
84 WARN missing_definition APOLLO_SV:00000565 IAO:0000115
85 WARN missing_definition APOLLO_SV:00000590 IAO:0000115
86 WARN missing_definition APOLLO_SV:00000606 IAO:0000115
87 WARN missing_definition APOLLO_SV:00000793 IAO:0000115
88 WARN missing_definition APOLLO_SV:00000794 IAO:0000115
89 WARN missing_definition APOLLO_SV:00000795 IAO:0000115
90 WARN missing_definition APOLLO_SV:00001008 IAO:0000115
91 WARN missing_obsolete_label APOLLO_SV:00000004 rdfs:label basis of@en
92 WARN missing_obsolete_label APOLLO_SV:00000011 rdfs:label control strategy reactive start time information@en
93 WARN missing_obsolete_label APOLLO_SV:00000076 rdfs:label μ@en
94 WARN missing_obsolete_label APOLLO_SV:00000077 rdfs:label σ@en
95 WARN missing_obsolete_label APOLLO_SV:00000079 rdfs:label deprecated log normal distribution@en
96 WARN missing_obsolete_label APOLLO_SV:00000095 rdfs:label deprecated discrete probability distribution
97 WARN missing_obsolete_label APOLLO_SV:00000116 rdfs:label causally_precedes@en
98 WARN missing_obsolete_label APOLLO_SV:00000125 rdfs:label school calendar@en
99 WARN missing_obsolete_label APOLLO_SV:00000143 rdfs:label vaccine disposition@en
100 WARN missing_obsolete_label APOLLO_SV:00000146 rdfs:label beta@en
101 WARN missing_obsolete_label APOLLO_SV:00000148 rdfs:label random number seed@en
102 WARN missing_obsolete_label APOLLO_SV:00000161 rdfs:label MIDAS scenario@en
103 WARN missing_obsolete_label APOLLO_SV:00000198 rdfs:label agent model ecosystem census description@en
104 WARN missing_obsolete_label APOLLO_SV:00000199 rdfs:label compartment model population and environment census@en
105 WARN missing_obsolete_label APOLLO_SV:00000249 rdfs:label nonparametric probability distribution@en
106 WARN missing_obsolete_label APOLLO_SV:00000370 rdfs:label deprecated homeostasis@en
107 WARN missing_obsolete_label APOLLO_SV:00000399 rdfs:label deprecated infection case count@en
108 WARN missing_obsolete_label APOLLO_SV:00000435 rdfs:label closure period@en
109 WARN missing_obsolete_label APOLLO_SV:00000475 rdfs:label gonotrophic period duration@en
110 WARN missing_obsolete_label APOLLO_SV:00000496 rdfs:label ORCID@en
111 INFO lowercase_definition APOLLO_SV:00000005 IAO:0000115 a planned process that (1) has at least one process part that has as participants representations of participants (in place of those participants) of processes of type X, and where all such process parts substitute for parts of processes of type X, and (2) is carried out for the purpose of planning for processes of type X, learning more about processes of type X, or teaching about processes of type X.@en
112 INFO lowercase_definition APOLLO_SV:00000037 IAO:0000115 a commissions b, iff a does not participate in the creation or execution of b and participates in a legal agreement that c participates on the creation or execution of b and c getting something in exchange for that participation.@en
113 INFO lowercase_definition APOLLO_SV:00000055 IAO:0000600 the process of simulating a disease epidemic or pandemic. This term is not currently used in Apollo-WS.@en
114 INFO lowercase_definition APOLLO_SV:00000067 IAO:0000115 a simulates b, iff a is a purely intentional entity that is representing a fictional individual or fact b and a participates in a simulating.@en
115 INFO lowercase_definition APOLLO_SV:00000075 IAO:0000600 an objective of achieving satisfactory control of epidemic spread through a population@en
116 INFO lowercase_definition APOLLO_SV:00000076 IAO:0000600 the mean or expectation of a distribution@en
117 INFO lowercase_definition APOLLO_SV:00000077 IAO:0000600 standard deviation@en
118 INFO lowercase_definition APOLLO_SV:00000079 IAO:0000600 a continuous probability distribution over variable X whose parameters denoted μ and σ are, respectively, the mean and standard deviation of the variable’s natural logarithm@en
119 INFO lowercase_definition APOLLO_SV:00000081 IAO:0000600 a continuous probability distribution with lower limit a, upper limit b and mode c, where a < b and a <= c <= b.@en
120 INFO lowercase_definition APOLLO_SV:00000082 IAO:0000600 a discrete probability distribution@en
121 INFO lowercase_definition APOLLO_SV:00000083 IAO:0000600 a discrete probability distribution that conditions on time@en
122 INFO lowercase_definition APOLLO_SV:00000090 IAO:0000115 a study design execution that has as its specified output one or more measured vaccination efficacy data items@en
123 INFO lowercase_definition APOLLO_SV:00000090 IAO:0000600 an experiment that measures vaccination efficacy from a sample of vaccinated and possibly unvaccinated individuals@en
124 INFO lowercase_definition APOLLO_SV:00000091 IAO:0000600 an organism that has the property of being immune to a specific disease agent@en
125 INFO lowercase_definition APOLLO_SV:00000092 IAO:0000600 a type of interval estimate of a population parameter used to indicate the reliability of an estimate. How frequently the observed interval contains the parameter is determined by the confidence level or confidence coefficient, in this type the confidence level is 95%@en
126 INFO lowercase_definition APOLLO_SV:00000093 IAO:0000600 a type of interval estimate of a population parameter that has the property that the true value of the estimated populatin parameter has a (specified) particular probability of being in the confidence interval given the data on which the estimate is derived.@en
127 INFO lowercase_definition APOLLO_SV:00000095 IAO:0000600 a probability distribution over a discrete random variable@en
128 INFO lowercase_definition APOLLO_SV:00000107 IAO:0000115 a fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force@en
129 INFO lowercase_definition APOLLO_SV:00000107 IAO:0000600 a fiat object part that is in gaseous phase and that is the outer layer of an object in space and is held to the object by gravitational force@en
130 INFO lowercase_definition APOLLO_SV:00000119 IAO:0000115 a unique identifier that refers to a protocol for vaccinating one person
131 INFO lowercase_definition APOLLO_SV:00000120 IAO:0000600 the number of doses of vaccine that are recommended to achieve immunity@en
132 INFO lowercase_definition APOLLO_SV:00000121 IAO:0000600 an interbreeding population@en
133 INFO lowercase_definition APOLLO_SV:00000122 IAO:0000115 a unique identifier that refers to an antiviral drug product
134 INFO lowercase_definition APOLLO_SV:00000129 IAO:0000115 an epidemic control measure plan specification that has a conditional specification as part@en
135 INFO lowercase_definition APOLLO_SV:00000129 IAO:0000600 a control measure (program) that is initiated or modified by an epidemic-related event (or if you prefer, an event occurring within/during the simulation)@en
136 INFO lowercase_definition APOLLO_SV:00000137 IAO:0000600 the number of distinct antigenic strains in a vaccine product @en
137 INFO lowercase_definition APOLLO_SV:00000148 IAO:0000600 random number seed@en
138 INFO lowercase_definition APOLLO_SV:00000150 IAO:0000600 a fraction of the target population, that once vaccinated, results in stopping further vaccination in the population@en
139 INFO lowercase_definition APOLLO_SV:00000207 IAO:0000115 an organism that is the bearer of resistance to infection@en
140 INFO lowercase_definition APOLLO_SV:00000216 IAO:0000115 a probability distribution over a discrete random variable@en
141 INFO lowercase_definition APOLLO_SV:00000216 IAO:0000600 a probability distribution over a discrete random variable@en
142 INFO lowercase_definition APOLLO_SV:00000229 IAO:0000115 an infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open.@en
143 INFO lowercase_definition APOLLO_SV:00000230 IAO:0000115 an infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious.@en
144 INFO lowercase_definition APOLLO_SV:00000244 IAO:0000115 a unique identifier that refers to a disease.@en
145 INFO lowercase_definition APOLLO_SV:00000254 IAO:0000600 a log-normal (or lognormal) distribution is a continuous probability distribution of a random variable whose logarithm is normally distributed.@en
146 INFO lowercase_definition APOLLO_SV:00000255 IAO:0000115 the gamma distribution is a two-parameter family of continuous probability distributions@en
147 INFO lowercase_definition APOLLO_SV:00000255 IAO:0000600 the gamma distribution is a two-parameter family of continuous probability distributions@en
148 INFO lowercase_definition APOLLO_SV:00000257 IAO:0000115 the continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable.@en
149 INFO lowercase_definition APOLLO_SV:00000257 IAO:0000600 the continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable.@en
150 INFO lowercase_definition APOLLO_SV:00000272 IAO:0000115 the duration of time that has elapsed from the zero reference point to a later time on the time scale@en
151 INFO lowercase_definition APOLLO_SV:00000330 IAO:0000115 a reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host.@en
152 INFO lowercase_definition APOLLO_SV:00000330 IAO:0000600 a reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host.@en
153 INFO lowercase_definition APOLLO_SV:00000331 IAO:0000115 an infection in an ecosystem occurring in one population of organisms@en
154 INFO lowercase_definition APOLLO_SV:00000331 IAO:0000600 an infection in an ecosystem occurring in one population of organisms@en
155 INFO lowercase_definition APOLLO_SV:00000332 IAO:0000115 a biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host@en
156 INFO lowercase_definition APOLLO_SV:00000332 IAO:0000600 a biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host@en
157 INFO lowercase_definition APOLLO_SV:00000333 IAO:0000115 an indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization@en
158 INFO lowercase_definition APOLLO_SV:00000333 IAO:0000600 an indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization@en
159 INFO lowercase_definition APOLLO_SV:00000543 IAO:0000115 (Q is_a Quality ⋀ D is_a Disposition ⋀ Q base of D) ® ∀q (q instance_of Q ® b (q inheres_in b ⋀ d (d instance_of D ⋀ d inheres_in b)))@en
160 INFO lowercase_definition APOLLO_SV:00000589 IAO:0000115 an individual treatment control strategy that is realized by one or more intensive care unit encounters for infected individuals in the population@en
161 INFO lowercase_definition APOLLO_SV:00000589 IAO:0000600 an individual treatment control strategy that is realized by treating one or more infected individuals in an intensive care unit@en
162 INFO lowercase_definition APOLLO_SV:00000598 IAO:0000115 an identifier that denotes a disease.@en
163 INFO lowercase_definition APOLLO_SV:00000599 IAO:0000115 a dataset that is about infectious disease acquisitions at particular times and particular places.@en
164 INFO lowercase_definition APOLLO_SV:00000600 IAO:0000115 a dataset that is about two or more hospital stays involving two or more patients.@en
165 INFO lowercase_definition APOLLO_SV:00000601 IAO:0000115 an individual human behavior that is the movements from one location to another throughout the day (e.g., work, home, stores, church, relatives' homes) in the areas adjacent to where the human lives at the time.@en
166 INFO lowercase_definition APOLLO_SV:00000602 IAO:0000115 a data set that is about the human daily movement behavior of the individual huamns in a given population.@en
167 INFO lowercase_definition APOLLO_SV:00000603 IAO:0000115 a data set that is about one or more potentially infectious contact processes in a population of host organisms.@en
168 INFO lowercase_definition APOLLO_SV:00000604 IAO:0000115 a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.@en
169 INFO lowercase_definition APOLLO_SV:00000605 IAO:0000115 an infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region.@en
170 INFO lowercase_definition APOLLO_SV:00000607 IAO:0000115 a population treatment census that is about one or more vaccinations of organisms in a population.@en