ROBOT Report - hso

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Types of errors

LevelNumber of errors
WARN121
INFO24
ERROR19

Error breakdown

RuleNumber of errors
missing_definition118
lowercase_definition24
duplicate_label10
duplicate_definition4
multiple_definitions4
equivalent_class_axiom_no_genus3
missing_ontology_license1

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Row Level Rule Name Subject Property Value
0 ERROR duplicate_definition HSO:0000407 IAO:0000115 A travel-associated surveillance strategy in which population units are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms.@en
1 ERROR duplicate_definition HSO:0000411 IAO:0000115 A travel-associated surveillance strategy in which population units are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms.@en
2 ERROR duplicate_definition HSO:0000396 IAO:0000115 A surveillance sampling strategy in which an aspired outcome is explicity stated.@en
3 ERROR duplicate_definition HSO:0000398 IAO:0000115 A surveillance sampling strategy in which an aspired outcome is explicity stated.@en
4 ERROR duplicate_label HSO:0000065 rdfs:label swab specimen@en
5 ERROR duplicate_label HSO:0000250 rdfs:label swab specimen@en
6 ERROR duplicate_label HSO:0000359 rdfs:label reporting country@en
7 ERROR duplicate_label HSO:0000375 rdfs:label reporting country@en
8 ERROR duplicate_label HSO:0000064 rdfs:label organ/tissue specimen@en
9 ERROR duplicate_label HSO:0000248 rdfs:label organ/tissue specimen@en
10 ERROR duplicate_label HSO:0000063 rdfs:label fluid specimen@en
11 ERROR duplicate_label HSO:0000247 rdfs:label fluid specimen@en
12 ERROR duplicate_label HSO:0000066 rdfs:label excreta specimen@en
13 ERROR duplicate_label HSO:0000249 rdfs:label excreta specimen@en
14 ERROR missing_ontology_license http://purl.obolibrary.org/obo/hso.owl dc:license
15 ERROR multiple_definitions HSO:0000283 IAO:0000115 A protocol that describes which diagnostic test or tests will be used to identify animals (or another epidemiological unit) infected with a specific pathogen, possibly in more than one round of screening.@en
16 ERROR multiple_definitions HSO:0000283 IAO:0000115 A protocol to be used within a surveillance activity to classify epidemiological units according to a specific outcome.@en
17 ERROR multiple_definitions HSO:0000374 IAO:0000115 A sampling strategy in which population units are chosen for investigation into a disease cluster or outbreak.@en
18 ERROR multiple_definitions HSO:0000374 IAO:0000115 a specific type of surveillance activity which has as surveillance context an outbreak investigation@en
19 WARN equivalent_class_axiom_no_genus HSO:0000062 HSO:0000242 OBI:0100026
20 WARN equivalent_class_axiom_no_genus HSO:0000064 HSO:0000243 UBERON:0000061
21 WARN equivalent_class_axiom_no_genus HSO:0000066 HSO:0000243 UBERON:0000174
22 WARN missing_definition HSO:0000002 IAO:0000115
23 WARN missing_definition HSO:0000003 IAO:0000115
24 WARN missing_definition HSO:0000004 IAO:0000115
25 WARN missing_definition HSO:0000005 IAO:0000115
26 WARN missing_definition HSO:0000006 IAO:0000115
27 WARN missing_definition HSO:0000007 IAO:0000115
28 WARN missing_definition HSO:0000008 IAO:0000115
29 WARN missing_definition HSO:0000009 IAO:0000115
30 WARN missing_definition HSO:0000010 IAO:0000115
31 WARN missing_definition HSO:0000016 IAO:0000115
32 WARN missing_definition HSO:0000017 IAO:0000115
33 WARN missing_definition HSO:0000018 IAO:0000115
34 WARN missing_definition HSO:0000019 IAO:0000115
35 WARN missing_definition HSO:0000057 IAO:0000115
36 WARN missing_definition HSO:0000058 IAO:0000115
37 WARN missing_definition HSO:0000059 IAO:0000115
38 WARN missing_definition HSO:0000061 IAO:0000115
39 WARN missing_definition HSO:0000063 IAO:0000115
40 WARN missing_definition HSO:0000064 IAO:0000115
41 WARN missing_definition HSO:0000065 IAO:0000115
42 WARN missing_definition HSO:0000066 IAO:0000115
43 WARN missing_definition HSO:0000067 IAO:0000115
44 WARN missing_definition HSO:0000068 IAO:0000115
45 WARN missing_definition HSO:0000069 IAO:0000115
46 WARN missing_definition HSO:0000074 IAO:0000115
47 WARN missing_definition HSO:0000075 IAO:0000115
48 WARN missing_definition HSO:0000076 IAO:0000115
49 WARN missing_definition HSO:0000077 IAO:0000115
50 WARN missing_definition HSO:0000078 IAO:0000115
51 WARN missing_definition HSO:0000079 IAO:0000115
52 WARN missing_definition HSO:0000080 IAO:0000115
53 WARN missing_definition HSO:0000081 IAO:0000115
54 WARN missing_definition HSO:0000082 IAO:0000115
55 WARN missing_definition HSO:0000083 IAO:0000115
56 WARN missing_definition HSO:0000084 IAO:0000115
57 WARN missing_definition HSO:0000088 IAO:0000115
58 WARN missing_definition HSO:0000205 IAO:0000115
59 WARN missing_definition HSO:0000209 IAO:0000115
60 WARN missing_definition HSO:0000210 IAO:0000115
61 WARN missing_definition HSO:0000211 IAO:0000115
62 WARN missing_definition HSO:0000213 IAO:0000115
63 WARN missing_definition HSO:0000242 IAO:0000115
64 WARN missing_definition HSO:0000243 IAO:0000115
65 WARN missing_definition HSO:0000244 IAO:0000115
66 WARN missing_definition HSO:0000246 IAO:0000115
67 WARN missing_definition HSO:0000247 IAO:0000115
68 WARN missing_definition HSO:0000248 IAO:0000115
69 WARN missing_definition HSO:0000249 IAO:0000115
70 WARN missing_definition HSO:0000250 IAO:0000115
71 WARN missing_definition HSO:0000251 IAO:0000115
72 WARN missing_definition HSO:0000253 IAO:0000115
73 WARN missing_definition HSO:0000254 IAO:0000115
74 WARN missing_definition HSO:0000255 IAO:0000115
75 WARN missing_definition HSO:0000258 IAO:0000115
76 WARN missing_definition HSO:0000259 IAO:0000115
77 WARN missing_definition HSO:0000260 IAO:0000115
78 WARN missing_definition HSO:0000262 IAO:0000115
79 WARN missing_definition HSO:0000263 IAO:0000115
80 WARN missing_definition HSO:0000266 IAO:0000115
81 WARN missing_definition HSO:0000267 IAO:0000115
82 WARN missing_definition HSO:0000272 IAO:0000115
83 WARN missing_definition HSO:0000273 IAO:0000115
84 WARN missing_definition HSO:0000274 IAO:0000115
85 WARN missing_definition HSO:0000275 IAO:0000115
86 WARN missing_definition HSO:0000276 IAO:0000115
87 WARN missing_definition HSO:0000277 IAO:0000115
88 WARN missing_definition HSO:0000278 IAO:0000115
89 WARN missing_definition HSO:0000279 IAO:0000115
90 WARN missing_definition HSO:0000285 IAO:0000115
91 WARN missing_definition HSO:0000286 IAO:0000115
92 WARN missing_definition HSO:0000287 IAO:0000115
93 WARN missing_definition HSO:0000288 IAO:0000115
94 WARN missing_definition HSO:0000289 IAO:0000115
95 WARN missing_definition HSO:0000295 IAO:0000115
96 WARN missing_definition HSO:0000296 IAO:0000115
97 WARN missing_definition HSO:0000297 IAO:0000115
98 WARN missing_definition HSO:0000298 IAO:0000115
99 WARN missing_definition HSO:0000299 IAO:0000115
100 WARN missing_definition HSO:0000300 IAO:0000115
101 WARN missing_definition HSO:0000301 IAO:0000115
102 WARN missing_definition HSO:0000302 IAO:0000115
103 WARN missing_definition HSO:0000305 IAO:0000115
104 WARN missing_definition HSO:0000306 IAO:0000115
105 WARN missing_definition HSO:0000307 IAO:0000115
106 WARN missing_definition HSO:0000308 IAO:0000115
107 WARN missing_definition HSO:0000309 IAO:0000115
108 WARN missing_definition HSO:0000314 IAO:0000115
109 WARN missing_definition HSO:0000315 IAO:0000115
110 WARN missing_definition HSO:0000317 IAO:0000115
111 WARN missing_definition HSO:0000318 IAO:0000115
112 WARN missing_definition HSO:0000319 IAO:0000115
113 WARN missing_definition HSO:0000320 IAO:0000115
114 WARN missing_definition HSO:0000321 IAO:0000115
115 WARN missing_definition HSO:0000322 IAO:0000115
116 WARN missing_definition HSO:0000323 IAO:0000115
117 WARN missing_definition HSO:0000331 IAO:0000115
118 WARN missing_definition HSO:0000354 IAO:0000115
119 WARN missing_definition HSO:0000355 IAO:0000115
120 WARN missing_definition HSO:0000359 IAO:0000115
121 WARN missing_definition HSO:0000360 IAO:0000115
122 WARN missing_definition HSO:0000362 IAO:0000115
123 WARN missing_definition HSO:0000363 IAO:0000115
124 WARN missing_definition HSO:0000364 IAO:0000115
125 WARN missing_definition HSO:0000365 IAO:0000115
126 WARN missing_definition HSO:0000376 IAO:0000115
127 WARN missing_definition HSO:0000377 IAO:0000115
128 WARN missing_definition HSO:0000378 IAO:0000115
129 WARN missing_definition HSO:0000380 IAO:0000115
130 WARN missing_definition HSO:0000381 IAO:0000115
131 WARN missing_definition HSO:0000382 IAO:0000115
132 WARN missing_definition HSO:0000383 IAO:0000115
133 WARN missing_definition HSO:0000384 IAO:0000115
134 WARN missing_definition HSO:0000389 IAO:0000115
135 WARN missing_definition HSO:0000390 IAO:0000115
136 WARN missing_definition HSO:0000393 IAO:0000115
137 WARN missing_definition HSO:0000394 IAO:0000115
138 WARN missing_definition HSO:0000395 IAO:0000115
139 WARN missing_definition HSO:0000414 IAO:0000115
140 INFO lowercase_definition HSO:0000001 IAO:0000115 a planned process which systematically, continuously or repeatedly measures, collected, collates, analyses, interprets and disseminates health and welfare related data from defined populations.@en
141 INFO lowercase_definition HSO:0000014 IAO:0000115 a role given to a specific herd of domesticated animals, specifying that they are raised in an agricultural setting with a specific purpose.@en
142 INFO lowercase_definition HSO:0000062 IAO:0000115 a specimen collected from an organism.@en
143 INFO lowercase_definition HSO:0000212 IAO:0000115 a collection of properties used to assign numeric results to a surveillance activity@en
144 INFO lowercase_definition HSO:0000252 IAO:0000115 s specimen categorization which described the type of entity from which the specimen was collected@en
145 INFO lowercase_definition HSO:0000310 IAO:0000115 property assigning specific datum to diagnostic tests which allows identification of their type
146 INFO lowercase_definition HSO:0000311 IAO:0000115 assignment of data available as information content to assays
147 INFO lowercase_definition HSO:0000332 IAO:0000115 \"This sub-section specifies the population(s) that were sampled. \"@en
148 INFO lowercase_definition HSO:0000339 IAO:0000115 \"This section describes the activies undertaken to ensure that the people, processes and technology (e.g. web-based applications, GPS system) were ready to collect data and metadata. It includes the strategy, planning and training activities in preparation for the specific sampling activity. This description might include information on: - Preparing a sample storage and / or shipment strategy; - Training staff how to collect samples, e.g. physician; - Training staff how to analyze selected samples in the lab, e.g. perform ring trials - Provisioning of collection resources (e.g. laptops, collection apps, central data or sample repositories, questionnaires, information leaflets or letters, required lab material); - Agreements with intermediate collection bodies, (e.g. sub-contractors); - How security and confidentiality of data to be collected and data transmission was guaranteed\"@en
149 INFO lowercase_definition HSO:0000341 IAO:0000115 \"This section describes how the collected lab data and metadata were loaded into a suitable electronic environment for further processing. It may include a description of manual or automatic data capture processes that were applied to extract e.g. metadata from paper questionnaires, or converting the formats of files or encoding the variables received. It may also include analysis of the metadata and paradata associated with collection to ensure the collection activities have met requirements. It might also describe how physical samples or related material (questionnaires) will be archived. When software is used for data collection the version and software archiving should be described.\"@en
150 INFO lowercase_definition HSO:0000342 IAO:0000115 \"This section describes any activity related to data integration or data fusion. The data collection could be a combination of new and historical data, from external or internal sources, from a variety of collection instruments etc. For example the data collection could be enriched by information from official (governmental) or non-official sources. It could further include a description on: - Data pooling, with the aim of increasing the effective number of observations of some phenomena; - Mapping or record linkage routines, with the aim of linking different data sources that use different encoding schemas; - Prioritising, when two or more sources contain data for the same variable, with potentially different values. - Data anonymization, e.g. if identifiers such as name and address are stripped to help to protect confidentiality.\"@en
151 INFO lowercase_definition HSO:0000343 IAO:0000115 \"This section describes if data/variables were classified and/or encoded. Examples: - Automatic coding routines that assign numeric codes to text responses according to a pre-determined statistical classification. - Classification based on analytical results (e.g. MLST pattern), bioinformatics analysis (e.g. phylogenetic trees) or mathematical models (PCA, SVM / ANN)\"@en
152 INFO lowercase_definition HSO:0000345 IAO:0000115 \"This section describes what action was taken for incorrect, missing, unreliable or outdated data. For example new values may have been inserted or outdated data may have been removed. It should describe whether data were added or changed, the method used, and the flags used to mark them as changed. \"@en
153 INFO lowercase_definition HSO:0000350 IAO:0000115 \"This section describes how the quality of the generated surveillance statistical outputs were validated, in accordance with a general quality framework and with expectations. Validation activities can include: - Checking that the population coverage and response rates are as required; - Comparing the statistics with previous cycles (if applicable); - Checking that the associated metadata, paradata and quality indicators are present and in line with expectations; - Checking geospatial consistency of the data; - Confronting the statistics against other relevant data (both internal and external); - Investigating inconsistencies in the statistics; - Performing macro editing; - Validating the statistics against expectations and domain intelligence.\"@en
154 INFO lowercase_definition HSO:0000353 IAO:0000115 annotations created to map specific entities to their origin in the Standard Sample Description, a terminology catalogue maintained by the European Foos Safety Agency (EFSA). https://www.efsa.europa.eu/en/efsajournal/pub/3424@en
155 INFO lowercase_definition HSO:0000356 IAO:0000115 the weight of a specific collected specimen. use sub-properties to specify weight units@en
156 INFO lowercase_definition HSO:0000357 IAO:0000115 the weight of a specific collected specimen, in grams@en
157 INFO lowercase_definition HSO:0000358 IAO:0000115 the weight of a specific collected specimen, in mililitres@en
158 INFO lowercase_definition HSO:0000369 IAO:0000115 this property allows a dataset to be explictly linked to any entities within it which can be referred to with an unique ID.@en
159 INFO lowercase_definition HSO:0000372 IAO:0000115 a type of outbreak investigation that focus specifically on foodborne agents/vehicles@en
160 INFO lowercase_definition HSO:0000373 IAO:0000115 a surveillance activity with the specific surveillance context of investigating a foodborne outbreak@en
161 INFO lowercase_definition HSO:0000374 IAO:0000115 a specific type of surveillance activity which has as surveillance context an outbreak investigation@en
162 INFO lowercase_definition HSO:0000375 IAO:0000115 this property specifies specifically whic country is responsible for the documentation about a specific surveillance activity@en
163 INFO lowercase_definition HSO:0000388 IAO:0000115 a quality that specifies the known status of a hazard occurrence in a given geograhial region.@en