ROBOT Report - ino

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Types of errors

LevelNumber of errors
INFO129
WARN89
ERROR8

Error breakdown

RuleNumber of errors
lowercase_definition128
annotation_whitespace43
missing_definition26
equivalent_class_axiom_no_genus17
duplicate_definition4
duplicate_label2
duplicate_exact_synonym2
missing_ontology_license1
misused_obsolete_label1
duplicate_label_synonym1
missing_superclass1

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Row Level Rule Name Subject Property Value
0 ERROR duplicate_definition INO:0000072 IAO:0000115 a regulation of transcription by binding to promoter that is further classified as a positive regulation
1 ERROR duplicate_definition INO:0000074 IAO:0000115 a regulation of transcription by binding to promoter that is further classified as a positive regulation
2 ERROR duplicate_definition INO:0000042 IAO:0000115 a negative regulation process that down-regulates gene expression level
3 ERROR duplicate_definition INO:0000095 IAO:0000115 a negative regulation process that down-regulates gene expression level
4 ERROR duplicate_label INO:0000109 rdfs:label macrophage-pathogen interaction@en
5 ERROR duplicate_label INO:0000146 rdfs:label macrophage-pathogen interaction@en
6 ERROR missing_ontology_license http://purl.obolibrary.org/obo/ino.owl dc:license
7 ERROR misused_obsolete_label INO:0000159 rdfs:label obsolete class@en
8 WARN annotation_whitespace INO:0000002 IAO:0000115 Interaction is a processual entity that has two or more participants (i.e., interactors) that have an effect upon one another. @en
9 WARN annotation_whitespace INO:0000003 IAO:0000115 an interaction network that includes at least two interactions and has a start point(s) and an end point(s).
10 WARN annotation_whitespace INO:0000006 IAO:0000115 an annotation property that lists keyword(s) useful for literature tagging and retrieval of sentences containing the type (or kind) of entity (e.g., interaction) as shown by the ontology term label and definition.
11 WARN annotation_whitespace INO:0000014 IAO:0000115 an edge is an object that represents a graphic line that links two interactors in an interaction.
12 WARN annotation_whitespace INO:0000018 IAO:0000115 a biological interaction that occurs in the organism level.
13 WARN annotation_whitespace INO:0000018 IAO:0000116 Examples: a bacterium interacts with a mouse, a cat interacts with a dog
14 WARN annotation_whitespace INO:0000019 IAO:0000115 A two-way interaction is an interaction that includes two different directions among two interactors.
15 WARN annotation_whitespace INO:0000024 IAO:0000115 a positive regulation that one interactor activates another.
16 WARN annotation_whitespace INO:0000030 IAO:0000115 an interaction that involves a gene and its environment (e.g., calcium in blood).
17 WARN annotation_whitespace INO:0000033 IAO:0000115 a negative regulation that attenuates the virulence of a pathogenic microbe.
18 WARN annotation_whitespace INO:0000035 IAO:0000115 a phosphorylation process that adds a phosphate to a protein kinase (possibly affecting its activity) by virtue of its own enzymic activity.
19 WARN annotation_whitespace INO:0000045 IAO:0000115 a gene expression process that results in protein production from a gene DNA sequence.
20 WARN annotation_whitespace INO:0000050 IAO:0000115 an indirect association that one interactor competes with another interactor in a specfiic process.
21 WARN annotation_whitespace INO:0000056 IAO:0000115 a gene expression that has decreased volume.
22 WARN annotation_whitespace INO:0000058 IAO:0000115 a direct physical association that one interactor is converted from another interactor.
23 WARN annotation_whitespace INO:0000059 IAO:0000115 an indirect association that one interactor cooperates with another interactor in a specfiic process.
24 WARN annotation_whitespace INO:0000061 IAO:0000115 an indirect association that two interactors are correlated in a process without defined influence of each other.
25 WARN annotation_whitespace INO:0000068 IAO:0000115 a regulation in which one interactor has a negative effect on another interactor
26 WARN annotation_whitespace INO:0000068 IAO:0000116 YH: different types of negative regulations exist. These types are related to different qualities and phenotyes of regulated targets.
27 WARN annotation_whitespace INO:0000073 IAO:0000115 a negative regulation that results in the decrease of one interactor volume.
28 WARN annotation_whitespace INO:0000076 IAO:0000115 an enzymatic reaction that leads to the breakdown of a biochemical entity.
29 WARN annotation_whitespace INO:0000084 IAO:0000115 a negative regulation that results in a destabilization.
30 WARN annotation_whitespace INO:0000086 IAO:0000115 a regulation that one interactor has a domit effect on the quality of another interactor. This differs from the accessory regulation.
31 WARN annotation_whitespace INO:0000088 IAO:0000115 a protein complex assembly that involves two proteins that form a dimer.
32 WARN annotation_whitespace INO:0000089 IAO:0000115 a regulation process that involves in two interactors co-regulate a third interactor.
33 WARN annotation_whitespace INO:0000096 IAO:0000116 YH: For example, \"IL-2 and IL-15 induced the production of IL-17 and IFN-γ in a dose dependent manner by PBMCs.”
34 WARN annotation_whitespace INO:0000102 IAO:0000115 a biological interaction that uses the information from a gene to synthesize a functional gene product.
35 WARN annotation_whitespace INO:0000103 IAO:0000115 a positive regulation that one interactor facilitates a phenomenon such as a phenotype. This is an accessory effect not a major one.
36 WARN annotation_whitespace INO:0000111 IAO:0000115 a protein dimerization where two proteins are different.
37 WARN annotation_whitespace INO:0000112 IAO:0000115 a protein dimerization where two proteins are the same.
38 WARN annotation_whitespace INO:0000114 IAO:0000115 a gene expression that has increased volume.
39 WARN annotation_whitespace INO:0000117 IAO:0000116 YH: different types of positive regulations exist. These types are related to different qualities and phenotyes of regulated targets.
40 WARN annotation_whitespace INO:0000122 IAO:0000115 a positive regulation that leads to the induction of a new interactor due to the presence of another interactor.
41 WARN annotation_whitespace INO:0000126 IAO:0000115 a negative regulation that one interactor interferes a process.
42 WARN annotation_whitespace INO:0000140 IAO:0000115 a biochemical reaction that one interactor neutrolizes another.
43 WARN annotation_whitespace INO:0000148 IAO:0000115 an indirect association that one interactor is preceded by another interactor.
44 WARN annotation_whitespace INO:0000155 IAO:0000115 a positive regulation that leads the recruitment of one interactor from one location to another.
45 WARN annotation_whitespace INO:0000157 IAO:0000115 A regulation represents a regulatory interaction between two interactors.
46 WARN annotation_whitespace INO:0000165 IAO:0000115 a postive interaction that one interactor increases the stability of another interactor.
47 WARN annotation_whitespace INO:0000174 IAO:0000115 a cell-cell interaction that transfers viral, bacterial, or both bacterial and viral DNA from one cell to another using a bacteriophage vector.
48 WARN annotation_whitespace INO:0000231 IAO:0000116 a correlation association that two genes are co-expressed in a system.
49 WARN annotation_whitespace INO:0000234 IAO:0000115 a negative regulation that results in the deregulation of one interactor on a process.
50 WARN annotation_whitespace INO:0000311 IAO:0000115 an interaction between two proteins.
51 WARN duplicate_exact_synonym INO:0000067 IAO:0000118 negative protein activity regulation
52 WARN duplicate_exact_synonym INO:0000104 IAO:0000118 negative protein activity regulation
53 WARN duplicate_label_synonym INO:0000114 IAO:0000118 overexpression
54 WARN equivalent_class_axiom_no_genus INO:0000008 RO:0000087 INO:0000005
55 WARN equivalent_class_axiom_no_genus INO:0000016 RO:0000087 INO:0000015
56 WARN equivalent_class_axiom_no_genus INO:0000017 RO:0000087 INO:0000011
57 WARN equivalent_class_axiom_no_genus INO:0000032 RO:0002211 INO:0000173
58 WARN equivalent_class_axiom_no_genus INO:0000034 RO:0002211 INO:0000045
59 WARN equivalent_class_axiom_no_genus INO:0000038 RO:0002213 INO:0000102
60 WARN equivalent_class_axiom_no_genus INO:0000039 RO:0002212 INO:0000102
61 WARN equivalent_class_axiom_no_genus INO:0000042 RO:0002212 INO:0000173
62 WARN equivalent_class_axiom_no_genus INO:0000043 RO:0002212 INO:0000045
63 WARN equivalent_class_axiom_no_genus INO:0000044 RO:0002211 INO:0000102
64 WARN equivalent_class_axiom_no_genus INO:0000047 RO:0000087 INO:0000069
65 WARN equivalent_class_axiom_no_genus INO:0000049 RO:0002213 INO:0000173
66 WARN equivalent_class_axiom_no_genus INO:0000053 RO:0002213 INO:0000045
67 WARN equivalent_class_axiom_no_genus INO:0000125 RO:0000087 INO:0000009
68 WARN equivalent_class_axiom_no_genus INO:0000141 RO:0000087 INO:0000134
69 WARN equivalent_class_axiom_no_genus INO:0000144 RO:0000087 INO:0000137
70 WARN equivalent_class_axiom_no_genus INO:0000151 RO:0000087 INO:0000010
71 WARN missing_definition INO:0000036 IAO:0000115
72 WARN missing_definition INO:0000041 IAO:0000115
73 WARN missing_definition INO:0000062 IAO:0000115
74 WARN missing_definition INO:0000066 IAO:0000115
75 WARN missing_definition INO:0000080 IAO:0000115
76 WARN missing_definition INO:0000082 IAO:0000115
77 WARN missing_definition INO:0000083 IAO:0000115
78 WARN missing_definition INO:0000090 IAO:0000115
79 WARN missing_definition INO:0000092 IAO:0000115
80 WARN missing_definition INO:0000110 IAO:0000115
81 WARN missing_definition INO:0000115 IAO:0000115
82 WARN missing_definition INO:0000117 IAO:0000115
83 WARN missing_definition INO:0000121 IAO:0000115
84 WARN missing_definition INO:0000123 IAO:0000115
85 WARN missing_definition INO:0000127 IAO:0000115
86 WARN missing_definition INO:0000128 IAO:0000115
87 WARN missing_definition INO:0000131 IAO:0000115
88 WARN missing_definition INO:0000132 IAO:0000115
89 WARN missing_definition INO:0000136 IAO:0000115
90 WARN missing_definition INO:0000139 IAO:0000115
91 WARN missing_definition INO:0000142 IAO:0000115
92 WARN missing_definition INO:0000149 IAO:0000115
93 WARN missing_definition INO:0000156 IAO:0000115
94 WARN missing_definition INO:0000159 IAO:0000115
95 WARN missing_definition INO:0000178 IAO:0000115
96 WARN missing_definition INO:0000231 IAO:0000115
97 INFO lowercase_definition INO:0000003 IAO:0000115 an interaction network that includes at least two interactions and has a start point(s) and an end point(s).
98 INFO lowercase_definition INO:0000004 IAO:0000115 an interaction network model that is represented by a probabilistic graphical model (a type of statistical model) that represents a set of random variables and their conditional dependencies via a directed acyclic graph (DAG).
99 INFO lowercase_definition INO:0000005 IAO:0000115 an regulator role that is borne by a material entity that regulates an interaction.
100 INFO lowercase_definition INO:0000006 IAO:0000115 an annotation property that lists keyword(s) useful for literature tagging and retrieval of sentences containing the type (or kind) of entity (e.g., interaction) as shown by the ontology term label and definition.
101 INFO lowercase_definition INO:0000007 IAO:0000115 a positive regulation that one interactor up-regulates another.
102 INFO lowercase_definition INO:0000008 IAO:0000115 an interactor that regulates an interaction.
103 INFO lowercase_definition INO:0000009 IAO:0000115 an interactor role that is borne by a material entity that acts as an input of an interaction.
104 INFO lowercase_definition INO:0000010 IAO:0000115 an interactor role that is borne by a material entity that acts as an output of an interaction.
105 INFO lowercase_definition INO:0000011 IAO:0000115 a positive regulator role that is borne by a material entity that activates an interaction.
106 INFO lowercase_definition INO:0000012 IAO:0000115 an interaction network model that is represented by at least two mutual information interactions.
107 INFO lowercase_definition INO:0000013 IAO:0000115 a node is an object that represents an interactor in a graph of an interaction or interaction network.
108 INFO lowercase_definition INO:0000014 IAO:0000115 an edge is an object that represents a graphic line that links two interactors in an interaction.
109 INFO lowercase_definition INO:0000015 IAO:0000115 a role that is borne by a material entity to act as a participant in an interaction process.
110 INFO lowercase_definition INO:0000016 IAO:0000115 an interactor is a material entity that participates in an interaction.
111 INFO lowercase_definition INO:0000017 IAO:0000115 a positive interaction regulator that activates an interaction.
112 INFO lowercase_definition INO:0000018 IAO:0000115 a biological interaction that occurs in the organism level.
113 INFO lowercase_definition INO:0000020 IAO:0000115 an object property between an activation process and a material entity that acts as an activator during the process.
114 INFO lowercase_definition INO:0000021 IAO:0000115 a pathway that exists in human body.
115 INFO lowercase_definition INO:0000022 IAO:0000115 an up-regulation that one interactor up-regulates the secretion of another interactor.
116 INFO lowercase_definition INO:0000023 IAO:0000115 an interaction involving human molecules
117 INFO lowercase_definition INO:0000024 IAO:0000115 a positive regulation that one interactor activates another.
118 INFO lowercase_definition INO:0000025 IAO:0000115 an interaction that includes a gene and a cell as interactors.
119 INFO lowercase_definition INO:0000026 IAO:0000115 an activation process where one protein is activated by a material entity
120 INFO lowercase_definition INO:0000027 IAO:0000115 a biological interaction that involves two cells as interactors.
121 INFO lowercase_definition INO:0000028 IAO:0000115 an activation process where one protein is activated by a gene mutant
122 INFO lowercase_definition INO:0000029 IAO:0000115 a biochemical binding where a substance binds to the same site an agonist would bind to without causing activation of the receptor
123 INFO lowercase_definition INO:0000030 IAO:0000115 an interaction that involves a gene and its environment (e.g., calcium in blood).
124 INFO lowercase_definition INO:0000031 IAO:0000115 a regulation process that regulates the location of a protein
125 INFO lowercase_definition INO:0000032 IAO:0000115 a gene expression regulation process that involves the regulation of a gene transcription.
126 INFO lowercase_definition INO:0000033 IAO:0000115 a negative regulation that attenuates the virulence of a pathogenic microbe.
127 INFO lowercase_definition INO:0000034 IAO:0000115 a gene expression regulation process that involves the regulation of a protein translation process.
128 INFO lowercase_definition INO:0000035 IAO:0000115 a phosphorylation process that adds a phosphate to a protein kinase (possibly affecting its activity) by virtue of its own enzymic activity.
129 INFO lowercase_definition INO:0000037 IAO:0000115 a regulation process that regulates the activation of a gene so that the gene is expressed at a particular time
130 INFO lowercase_definition INO:0000038 IAO:0000115 a regulation process that positively regulates gene expression level
131 INFO lowercase_definition INO:0000039 IAO:0000115 a regulation process that negatively regulates gene expression level
132 INFO lowercase_definition INO:0000040 IAO:0000115 a human molecular reaction that is specifically a biochemical reaction
133 INFO lowercase_definition INO:0000042 IAO:0000115 a negative regulation process that down-regulates gene expression level
134 INFO lowercase_definition INO:0000043 IAO:0000115 a negative regulation process that down-regulates protein translation level
135 INFO lowercase_definition INO:0000044 IAO:0000115 a regulation process that regulates gene expression level
136 INFO lowercase_definition INO:0000045 IAO:0000115 a gene expression process that results in protein production from a gene DNA sequence.
137 INFO lowercase_definition INO:0000046 IAO:0000115 a negative regulation of gene transcription process that specifiies the negative regulation being an inhibition.
138 INFO lowercase_definition INO:0000047 IAO:0000115 an interactor that starts or speeds up a chemical reaction while undergoing no permanent change itself.
139 INFO lowercase_definition INO:0000048 IAO:0000115 a coprecipitation that occurs through an immunoprecipitation process.
140 INFO lowercase_definition INO:0000049 IAO:0000115 a regulation of transcription process that inviolves a positive regulation.
141 INFO lowercase_definition INO:0000050 IAO:0000115 an indirect association that one interactor competes with another interactor in a specfiic process.
142 INFO lowercase_definition INO:0000051 IAO:0000115 a positive regulation of gene transcription process that inviolves an activation of the gene transcription.
143 INFO lowercase_definition INO:0000052 IAO:0000115 an activation of gene transcription that is achieved by a low level of a protein
144 INFO lowercase_definition INO:0000053 IAO:0000115 a regulation of translation process that positively regulates protein translation level
145 INFO lowercase_definition INO:0000054 IAO:0000115 a direct interaction where an antigen interacts with an antibody physically.
146 INFO lowercase_definition INO:0000055 IAO:0000115 a regulation process that regulates an activity of a protein
147 INFO lowercase_definition INO:0000056 IAO:0000115 a gene expression that has decreased volume.
148 INFO lowercase_definition INO:0000057 IAO:0000115 a regulation that one interactor controls the quality of another interactor to a specific range
149 INFO lowercase_definition INO:0000058 IAO:0000115 a direct physical association that one interactor is converted from another interactor.
150 INFO lowercase_definition INO:0000059 IAO:0000115 an indirect association that one interactor cooperates with another interactor in a specfiic process.
151 INFO lowercase_definition INO:0000060 IAO:0000115 a colocalization that two interactors are precipitated together.
152 INFO lowercase_definition INO:0000061 IAO:0000115 an indirect association that two interactors are correlated in a process without defined influence of each other.
153 INFO lowercase_definition INO:0000063 IAO:0000115 an interaction that involves a cell and its environment as interactors
154 INFO lowercase_definition INO:0000064 IAO:0000115 an immuno-precipitation that one interactor is precipitated based on an cross- immunological precipitation process.
155 INFO lowercase_definition INO:0000065 IAO:0000115 an interaction that involves an organism and its environment as interactors
156 INFO lowercase_definition INO:0000067 IAO:0000115 a regulation of protein activitiy process that involves a negative regulation
157 INFO lowercase_definition INO:0000068 IAO:0000115 a regulation in which one interactor has a negative effect on another interactor
158 INFO lowercase_definition INO:0000069 IAO:0000115 an interactor role that is played by a material entity that starts or speeds up a chemical reaction while undergoing no permanent change itself.
159 INFO lowercase_definition INO:0000070 IAO:0000115 a negative regulation of protein activitiy process that involves an inhibition of a protein activity
160 INFO lowercase_definition INO:0000071 IAO:0000115 a regulation of transcription process that occurs through the binding to a promotor of a gene
161 INFO lowercase_definition INO:0000072 IAO:0000115 a regulation of transcription by binding to promoter that is further classified as a positive regulation
162 INFO lowercase_definition INO:0000073 IAO:0000115 a negative regulation that results in the decrease of one interactor volume.
163 INFO lowercase_definition INO:0000074 IAO:0000115 a regulation of transcription by binding to promoter that is further classified as a positive regulation
164 INFO lowercase_definition INO:0000075 IAO:0000115 a positive regulation of gene expression process that activates a gene so that the gene is expressed at a particular time
165 INFO lowercase_definition INO:0000076 IAO:0000115 an enzymatic reaction that leads to the breakdown of a biochemical entity.
166 INFO lowercase_definition INO:0000077 IAO:0000115 a regulation of transcription process where two or more regulators regulate a gene transcription
167 INFO lowercase_definition INO:0000078 IAO:0000115 an activation of gene transcription that is achieved by a high level of a protein
168 INFO lowercase_definition INO:0000079 IAO:0000115 a regulation of transcription process through binding to a promoter or regulating the promoter binding activity
169 INFO lowercase_definition INO:0000081 IAO:0000115 an activation of gene transcription that is achieved by a phosphorylated protein
170 INFO lowercase_definition INO:0000084 IAO:0000115 a negative regulation that results in a destabilization.
171 INFO lowercase_definition INO:0000085 IAO:0000115 a negative regulation process that inhibits gene expression level
172 INFO lowercase_definition INO:0000086 IAO:0000115 a regulation that one interactor has a domit effect on the quality of another interactor. This differs from the accessory regulation.
173 INFO lowercase_definition INO:0000087 IAO:0000115 an annotation property that specifies the dependency pattern of the literature keywords that match to the ontology interaction type.
174 INFO lowercase_definition INO:0000088 IAO:0000115 a protein complex assembly that involves two proteins that form a dimer.
175 INFO lowercase_definition INO:0000089 IAO:0000115 a regulation process that involves in two interactors co-regulate a third interactor.
176 INFO lowercase_definition INO:0000091 IAO:0000115 a negative regulation that results in a disruption.
177 INFO lowercase_definition INO:0000093 IAO:0000115 a negative regulation that one interactor down-regulates another.
178 INFO lowercase_definition INO:0000094 IAO:0000115 a positive regulation of gene expression process that up-regulates gene expression level
179 INFO lowercase_definition INO:0000095 IAO:0000115 a negative regulation process that down-regulates gene expression level
180 INFO lowercase_definition INO:0000096 IAO:0000115 an induction that leads to the production of an entity
181 INFO lowercase_definition INO:0000097 IAO:0000115 a negative regulation that one interactor eliminates another.
182 INFO lowercase_definition INO:0000098 IAO:0000115 a cell-cell interaction that the transfers genetic material between bacterial cells by direct cell-to-cell contact or by a bridge-like connection between two cells.
183 INFO lowercase_definition INO:0000100 IAO:0000115 a regulation process where one gene product regulates an assembly process which forms an assembly having another gene product.
184 INFO lowercase_definition INO:0000101 IAO:0000115 a human molecular interaction where one molecule controls another molecule.
185 INFO lowercase_definition INO:0000102 IAO:0000115 a biological interaction that uses the information from a gene to synthesize a functional gene product.
186 INFO lowercase_definition INO:0000103 IAO:0000115 a positive regulation that one interactor facilitates a phenomenon such as a phenotype. This is an accessory effect not a major one.
187 INFO lowercase_definition INO:0000104 IAO:0000115 a regulation of protein activitiy process that involves a positive regulation
188 INFO lowercase_definition INO:0000106 IAO:0000115 a genetic interaction that forms a hybrid gene formed from two previously separate genes. It can occur as the result of a translocation, interstitial deletion, or chromosomal inversion.
189 INFO lowercase_definition INO:0000108 IAO:0000115 an induction that is achieved by binding to a protein
190 INFO lowercase_definition INO:0000111 IAO:0000115 a protein dimerization where two proteins are different.
191 INFO lowercase_definition INO:0000112 IAO:0000115 a protein dimerization where two proteins are the same.
192 INFO lowercase_definition INO:0000114 IAO:0000115 a gene expression that has increased volume.
193 INFO lowercase_definition INO:0000116 IAO:0000115 a translocation that one interactor is precipitated based on an immunological precipitation process.
194 INFO lowercase_definition INO:0000119 IAO:0000115 a negative regulation that one interactor inactivates another.
195 INFO lowercase_definition INO:0000120 IAO:0000115 a positive regulation that leads to the increase of a quality of an entity.
196 INFO lowercase_definition INO:0000122 IAO:0000115 a positive regulation that leads to the induction of a new interactor due to the presence of another interactor.
197 INFO lowercase_definition INO:0000124 IAO:0000115 a negative regulation that one interactor inhibites another.
198 INFO lowercase_definition INO:0000125 IAO:0000115 an interactor that is an input of an interaction.
199 INFO lowercase_definition INO:0000126 IAO:0000115 a negative regulation that one interactor interferes a process.