/tmp/ipykernel_3061/2802220519.py:3: DeprecationWarning: Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0), (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries) but was not found to be installed on your system. If this would cause problems for you, please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466 import pandas as pd
OBO Foundry dashboard analysis¶
/usr/local/lib/python3.10/dist-packages/plotly/express/_core.py:2044: FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas. Pass observed=False to retain current behavior or observed=True to adopt the future default and silence this warning. /usr/local/lib/python3.10/dist-packages/plotly/express/_core.py:2065: FutureWarning: When grouping with a length-1 list-like, you will need to pass a length-1 tuple to get_group in a future version of pandas. Pass `(name,)` instead of `name` to silence this warning.
Ontologies by number of axioms
Ontologies by number of classes
Ontologies by how many ontologies use it
Different serialisations used
syntax RDF/XML Syntax 180 unknown 3 OWL/XML Syntax 1 Name: count, dtype: int64
Breakdown of used Axiom Types
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
AnnotationAssertion | 181 | 165283.467391 | 864752.934315 | 0.0 | 1605.75 | 7469.5 | 32072.50 | 10521317.0 |
Declaration | 181 | 31074.125000 | 198670.450000 | 0.0 | 462.00 | 1349.5 | 5335.50 | 2565122.0 |
SubClassOf | 176 | 42333.961957 | 227428.379349 | 0.0 | 357.25 | 1710.5 | 6734.00 | 2565090.0 |
EquivalentClasses | 130 | 2806.380435 | 14126.337306 | 0.0 | 0.00 | 19.5 | 228.75 | 128032.0 |
SubAnnotationPropertyOf | 111 | 9.375000 | 20.864005 | 0.0 | 0.00 | 2.0 | 8.00 | 179.0 |
TransitiveObjectProperty | 108 | 5.548913 | 9.736855 | 0.0 | 0.00 | 1.0 | 6.00 | 58.0 |
SubObjectPropertyOf | 101 | 38.326087 | 88.015847 | 0.0 | 0.00 | 2.0 | 30.50 | 700.0 |
DisjointClasses | 96 | 32.826087 | 122.188791 | 0.0 | 0.00 | 1.0 | 21.00 | 1252.0 |
ObjectPropertyRange | 80 | 13.711957 | 25.511353 | 0.0 | 0.00 | 0.0 | 18.00 | 146.0 |
ObjectPropertyDomain | 79 | 14.054348 | 26.585613 | 0.0 | 0.00 | 0.0 | 18.00 | 151.0 |
InverseObjectProperties | 77 | 8.717391 | 16.411595 | 0.0 | 0.00 | 0.0 | 13.00 | 113.0 |
ClassAssertion | 67 | 97.179348 | 535.483577 | 0.0 | 0.00 | 0.0 | 18.00 | 5528.0 |
SubPropertyChainOf | 64 | 9.679348 | 25.763328 | 0.0 | 0.00 | 0.0 | 2.00 | 148.0 |
FunctionalObjectProperty | 50 | 0.820652 | 1.687436 | 0.0 | 0.00 | 0.0 | 1.00 | 9.0 |
SymmetricObjectProperty | 45 | 1.320652 | 6.596108 | 0.0 | 0.00 | 0.0 | 0.00 | 86.0 |
DifferentIndividuals | 42 | 0.858696 | 6.066267 | 0.0 | 0.00 | 0.0 | 0.00 | 82.0 |
DataPropertyRange | 42 | 1.233696 | 3.686448 | 0.0 | 0.00 | 0.0 | 0.00 | 30.0 |
IrrefexiveObjectProperty | 40 | 0.478261 | 1.322180 | 0.0 | 0.00 | 0.0 | 0.00 | 9.0 |
DataPropertyDomain | 39 | 1.119565 | 3.225047 | 0.0 | 0.00 | 0.0 | 0.00 | 32.0 |
AnnotationPropertyRangeOf | 35 | 1.369565 | 10.605924 | 0.0 | 0.00 | 0.0 | 0.00 | 140.0 |
InverseFunctionalObjectProperty | 35 | 0.233696 | 0.557860 | 0.0 | 0.00 | 0.0 | 0.00 | 4.0 |
EquivalentObjectProperties | 31 | 1.516304 | 5.591734 | 0.0 | 0.00 | 0.0 | 0.00 | 36.0 |
SubDataPropertyOf | 31 | 0.913043 | 3.627919 | 0.0 | 0.00 | 0.0 | 0.00 | 33.0 |
Rule | 29 | 2.195652 | 7.001544 | 0.0 | 0.00 | 0.0 | 0.00 | 47.0 |
FunctionalDataProperty | 24 | 0.489130 | 1.554086 | 0.0 | 0.00 | 0.0 | 0.00 | 11.0 |
AsymmetricObjectProperty | 20 | 0.391304 | 1.698321 | 0.0 | 0.00 | 0.0 | 0.00 | 18.0 |
ObjectPropertyAssertion | 16 | 29.190217 | 193.172031 | 0.0 | 0.00 | 0.0 | 0.00 | 1573.0 |
DisjointObjectProperties | 13 | 0.163043 | 0.865579 | 0.0 | 0.00 | 0.0 | 0.00 | 10.0 |
ReflexiveObjectProperty | 10 | 0.103261 | 0.473552 | 0.0 | 0.00 | 0.0 | 0.00 | 3.0 |
AnnotationPropertyDomain | 8 | 0.168478 | 1.390399 | 0.0 | 0.00 | 0.0 | 0.00 | 17.0 |
DisjointUnion | 5 | 0.054348 | 0.414600 | 0.0 | 0.00 | 0.0 | 0.00 | 5.0 |
DataPropertyAssertion | 4 | 0.065217 | 0.615010 | 0.0 | 0.00 | 0.0 | 0.00 | 8.0 |
DatatypeDefinition | 2 | 0.108696 | 1.402235 | 0.0 | 0.00 | 0.0 | 0.00 | 19.0 |
Breakdown of used OWL Class Expression constructs
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
Class | 180 | 128511.010870 | 668156.625623 | 0.0 | 1415.75 | 5603.5 | 21748.75 | 7695272.0 |
ObjectSomeValuesFrom | 159 | 18869.380435 | 93707.405849 | 0.0 | 29.00 | 463.5 | 3069.50 | 898983.0 |
ObjectIntersectionOf | 123 | 4434.130435 | 21718.256833 | 0.0 | 0.00 | 27.5 | 478.00 | 225985.0 |
ObjectUnionOf | 85 | 22.407609 | 71.739527 | 0.0 | 0.00 | 0.0 | 11.25 | 767.0 |
ObjectAllValuesFrom | 69 | 27.586957 | 149.243092 | 0.0 | 0.00 | 0.0 | 6.00 | 1764.0 |
ObjectComplementOf | 63 | 16.793478 | 98.186567 | 0.0 | 0.00 | 0.0 | 2.00 | 1132.0 |
ObjectMinCardinality | 60 | 2.239130 | 7.921568 | 0.0 | 0.00 | 0.0 | 1.00 | 59.0 |
ObjectOneOf | 49 | 3.771739 | 28.549106 | 0.0 | 0.00 | 0.0 | 1.00 | 275.0 |
ObjectExactCardinality | 46 | 10.000000 | 92.753154 | 0.0 | 0.00 | 0.0 | 0.25 | 1251.0 |
DataMinCardinality | 26 | 0.239130 | 0.675400 | 0.0 | 0.00 | 0.0 | 0.00 | 4.0 |
DataExactCardinality | 22 | 0.543478 | 1.645747 | 0.0 | 0.00 | 0.0 | 0.00 | 7.0 |
DataSomeValuesFrom | 22 | 6.836957 | 64.253813 | 0.0 | 0.00 | 0.0 | 0.00 | 859.0 |
DataHasValue | 18 | 119.728261 | 1569.220583 | 0.0 | 0.00 | 0.0 | 0.00 | 21288.0 |
ObjectHasValue | 17 | 227.858696 | 1928.911647 | 0.0 | 0.00 | 0.0 | 0.00 | 21288.0 |
ObjectMaxCardinality | 17 | 0.570652 | 3.401287 | 0.0 | 0.00 | 0.0 | 0.00 | 41.0 |
ObjectHasSelf | 15 | 0.163043 | 0.735920 | 0.0 | 0.00 | 0.0 | 0.00 | 6.0 |
DataMaxCardinality | 2 | 0.010870 | 0.103972 | 0.0 | 0.00 | 0.0 | 0.00 | 1.0 |
DataAllValuesFrom | 1 | 0.027174 | 0.368605 | 0.0 | 0.00 | 0.0 | 0.00 | 5.0 |
OBO Score (Experimental)
ontology | score | score_dash | score_impact | |
---|---|---|---|---|
19 | omo | 0.925 | 0.889 | 0.962 |
25 | ro | 0.859 | 0.956 | 0.761 |
41 | bfo | 0.802 | 0.822 | 0.783 |
9 | go | 0.719 | 0.949 | 0.489 |
22 | pato | 0.717 | 0.956 | 0.478 |
17 | obi | 0.703 | 0.971 | 0.435 |
14 | ncbitaxon | 0.643 | 0.889 | 0.397 |
0 | cl | 0.626 | 0.949 | 0.304 |
168 | uberon | 0.615 | 0.838 | 0.391 |
24 | pr | 0.560 | 0.876 | 0.245 |
5 | envo | 0.558 | 0.949 | 0.168 |
2 | doid | 0.537 | 0.949 | 0.125 |
12 | mondo | 0.504 | 0.949 | 0.060 |
117 | nbo | 0.504 | 0.882 | 0.125 |
7 | fbdv | 0.504 | 0.993 | 0.016 |
47 | chebi | 0.503 | 0.593 | 0.413 |
32 | wbphenotype | 0.502 | 0.993 | 0.011 |
26 | symp | 0.496 | 0.949 | 0.043 |
15 | oba | 0.494 | 0.956 | 0.033 |
23 | plana | 0.491 | 0.971 | 0.011 |
4 | eco | 0.488 | 0.971 | 0.005 |
6 | fbcv | 0.485 | 0.949 | 0.022 |
10 | hancestro | 0.482 | 0.949 | 0.016 |
18 | obib | 0.479 | 0.920 | 0.038 |
28 | vbo | 0.478 | 0.956 | 0.000 |
27 | trans | 0.477 | 0.920 | 0.033 |
29 | vo | 0.476 | 0.882 | 0.071 |
3 | dpo | 0.474 | 0.949 | 0.000 |
126 | ogms | 0.472 | 0.711 | 0.234 |
35 | aism | 0.472 | 0.927 | 0.016 |
89 | hp | 0.471 | 0.822 | 0.120 |
113 | mp | 0.469 | 0.889 | 0.049 |
172 | wbls | 0.469 | 0.927 | 0.011 |
8 | gno | 0.466 | 0.927 | 0.005 |
21 | opl | 0.464 | 0.911 | 0.016 |
44 | caro | 0.464 | 0.727 | 0.201 |
101 | maxo | 0.463 | 0.904 | 0.022 |
69 | ecto | 0.460 | 0.904 | 0.016 |
38 | apollo_sv | 0.459 | 0.816 | 0.103 |
65 | dron | 0.457 | 0.838 | 0.076 |
132 | omrse | 0.457 | 0.816 | 0.098 |
16 | obcs | 0.452 | 0.882 | 0.022 |
20 | ontoavida | 0.452 | 0.904 | 0.000 |
84 | geno | 0.452 | 0.882 | 0.022 |
30 | vt | 0.449 | 0.882 | 0.016 |
80 | fypo | 0.447 | 0.889 | 0.005 |
1 | disdriv | 0.445 | 0.889 | 0.000 |
141 | pco | 0.444 | 0.778 | 0.109 |
144 | phipo | 0.444 | 0.882 | 0.005 |
74 | fbbt | 0.442 | 0.867 | 0.016 |
13 | mro | 0.441 | 0.882 | 0.000 |
11 | iao | 0.438 | 0.876 | 0.000 |
63 | ddpheno | 0.436 | 0.867 | 0.005 |
171 | wbbt | 0.435 | 0.860 | 0.011 |
31 | vto | 0.433 | 0.867 | 0.000 |
136 | oostt | 0.432 | 0.853 | 0.011 |
146 | po | 0.431 | 0.771 | 0.092 |
180 | zp | 0.427 | 0.844 | 0.011 |
178 | zfa | 0.427 | 0.838 | 0.016 |
68 | ecocore | 0.416 | 0.822 | 0.011 |
145 | planp | 0.413 | 0.822 | 0.005 |
140 | pcl | 0.411 | 0.822 | 0.000 |
34 | agro | 0.410 | 0.816 | 0.005 |
124 | occo | 0.408 | 0.816 | 0.000 |
58 | colao | 0.408 | 0.816 | 0.000 |
99 | lepao | 0.408 | 0.816 | 0.000 |
81 | gallont | 0.408 | 0.816 | 0.000 |
82 | gecko | 0.403 | 0.800 | 0.005 |
177 | zeco | 0.400 | 0.800 | 0.000 |
75 | fideo | 0.400 | 0.800 | 0.000 |
46 | cdno | 0.400 | 0.800 | 0.000 |
176 | xpo | 0.399 | 0.793 | 0.005 |
57 | cob | 0.397 | 0.756 | 0.038 |
50 | chmo | 0.396 | 0.742 | 0.049 |
94 | ico | 0.396 | 0.749 | 0.043 |
162 | swo | 0.394 | 0.771 | 0.016 |
95 | ido | 0.393 | 0.660 | 0.125 |
115 | mpio | 0.392 | 0.778 | 0.005 |
103 | mcro | 0.390 | 0.780 | 0.000 |
40 | bco | 0.388 | 0.771 | 0.005 |
153 | rbo | 0.388 | 0.771 | 0.005 |
120 | ngbo | 0.382 | 0.764 | 0.000 |
112 | mop | 0.382 | 0.742 | 0.022 |
66 | duo | 0.380 | 0.749 | 0.011 |
155 | rxno | 0.377 | 0.749 | 0.005 |
42 | bspo | 0.376 | 0.660 | 0.092 |
129 | ohpi | 0.371 | 0.742 | 0.000 |
169 | uo | 0.370 | 0.578 | 0.163 |
128 | ohmi | 0.369 | 0.733 | 0.005 |
62 | ddanat | 0.369 | 0.727 | 0.011 |
79 | fovt | 0.366 | 0.733 | 0.000 |
48 | cheminf | 0.366 | 0.733 | 0.000 |
143 | peco | 0.366 | 0.711 | 0.022 |
67 | ecao | 0.366 | 0.733 | 0.000 |
118 | ncit | 0.364 | 0.593 | 0.136 |
71 | epio | 0.363 | 0.727 | 0.000 |
33 | ado | 0.363 | 0.727 | 0.000 |
149 | proco | 0.360 | 0.720 | 0.000 |
150 | psdo | 0.360 | 0.720 | 0.000 |
45 | cdao | 0.358 | 0.711 | 0.005 |
161 | stato | 0.357 | 0.622 | 0.092 |
49 | chiro | 0.355 | 0.711 | 0.000 |
165 | to | 0.354 | 0.704 | 0.005 |
70 | emapa | 0.354 | 0.704 | 0.005 |
53 | clao | 0.354 | 0.704 | 0.005 |
164 | taxrank | 0.350 | 0.689 | 0.011 |
72 | exo | 0.347 | 0.660 | 0.033 |
61 | cto | 0.345 | 0.684 | 0.005 |
59 | cro | 0.344 | 0.689 | 0.000 |
60 | cteno | 0.344 | 0.689 | 0.000 |
43 | bto | 0.336 | 0.638 | 0.033 |
138 | ornaseq | 0.334 | 0.667 | 0.000 |
37 | apo | 0.334 | 0.667 | 0.000 |
97 | kisao | 0.334 | 0.667 | 0.000 |
64 | dideo | 0.333 | 0.660 | 0.005 |
170 | upheno | 0.333 | 0.638 | 0.027 |
73 | fao | 0.330 | 0.644 | 0.016 |
78 | foodon | 0.329 | 0.587 | 0.071 |
158 | sepio | 0.328 | 0.644 | 0.011 |
148 | ppo | 0.327 | 0.653 | 0.000 |
163 | t4fs | 0.327 | 0.653 | 0.000 |
123 | oarcs | 0.322 | 0.644 | 0.000 |
151 | pso | 0.322 | 0.644 | 0.000 |
88 | hom | 0.322 | 0.644 | 0.000 |
52 | cio | 0.322 | 0.644 | 0.000 |
36 | amphx | 0.322 | 0.644 | 0.000 |
157 | scdo | 0.322 | 0.638 | 0.005 |
147 | poro | 0.319 | 0.638 | 0.000 |
98 | labo | 0.319 | 0.638 | 0.000 |
77 | fobi | 0.316 | 0.631 | 0.000 |
137 | opmi | 0.316 | 0.593 | 0.038 |
83 | genepio | 0.313 | 0.593 | 0.033 |
102 | mco | 0.311 | 0.622 | 0.000 |
159 | so | 0.311 | 0.444 | 0.179 |
100 | ma | 0.311 | 0.622 | 0.000 |
104 | mf | 0.310 | 0.571 | 0.049 |
108 | miapa | 0.308 | 0.616 | 0.000 |
85 | geo | 0.307 | 0.571 | 0.043 |
125 | ogg | 0.302 | 0.549 | 0.054 |
51 | cido | 0.302 | 0.600 | 0.005 |
156 | sbo | 0.302 | 0.600 | 0.005 |
87 | hao | 0.300 | 0.600 | 0.000 |
122 | oae | 0.293 | 0.504 | 0.082 |
142 | pdro | 0.293 | 0.571 | 0.016 |
173 | xao | 0.293 | 0.571 | 0.016 |
55 | clyh | 0.289 | 0.578 | 0.000 |
76 | flopo | 0.288 | 0.571 | 0.005 |
56 | cmo | 0.285 | 0.520 | 0.049 |
127 | ohd | 0.285 | 0.571 | 0.000 |
175 | xlmod | 0.285 | 0.571 | 0.000 |
179 | zfs | 0.284 | 0.556 | 0.011 |
90 | hsapdv | 0.280 | 0.533 | 0.027 |
119 | ncro | 0.280 | 0.549 | 0.011 |
86 | gsso | 0.275 | 0.527 | 0.022 |
91 | hso | 0.275 | 0.549 | 0.000 |
105 | mfoem | 0.274 | 0.542 | 0.005 |
174 | xco | 0.272 | 0.527 | 0.016 |
109 | mmo | 0.272 | 0.527 | 0.016 |
152 | pw | 0.268 | 0.520 | 0.016 |
110 | mmusdv | 0.267 | 0.533 | 0.000 |
116 | ms | 0.266 | 0.520 | 0.011 |
130 | omit | 0.266 | 0.498 | 0.033 |
114 | mpath | 0.266 | 0.489 | 0.043 |
134 | ons | 0.264 | 0.511 | 0.016 |
154 | rs | 0.263 | 0.520 | 0.005 |
167 | txpo | 0.263 | 0.520 | 0.005 |
166 | tto | 0.256 | 0.511 | 0.000 |
121 | nomen | 0.252 | 0.504 | 0.000 |
135 | ontoneo | 0.252 | 0.504 | 0.000 |
107 | mi | 0.245 | 0.467 | 0.022 |
131 | omp | 0.242 | 0.467 | 0.016 |
39 | aro | 0.242 | 0.467 | 0.016 |
96 | ino | 0.241 | 0.460 | 0.022 |
54 | clo | 0.236 | 0.400 | 0.071 |
106 | mfomd | 0.233 | 0.444 | 0.022 |
92 | htn | 0.230 | 0.460 | 0.000 |
133 | one | 0.230 | 0.460 | 0.000 |
93 | iceo | 0.230 | 0.460 | 0.000 |
111 | mod | 0.202 | 0.393 | 0.011 |
160 | spd | 0.200 | 0.400 | 0.000 |
139 | ovae | 0.197 | 0.393 | 0.000 |
182 | olatdv | 0.000 | 0.000 | 0.000 |
181 | cvdo | 0.000 | 0.000 | 0.000 |
183 | pdumdv | 0.000 | 0.000 | 0.000 |
OBO Score Summary
count | mean | std | min | 25% | 50% | 75% | max | |
---|---|---|---|---|---|---|---|---|
score | 184.0 | 0.379125 | 0.124412 | 0.0 | 0.30575 | 0.3660 | 0.44550 | 0.925 |
score_dash | 184.0 | 0.704696 | 0.180670 | 0.0 | 0.57800 | 0.7155 | 0.84625 | 0.993 |
score_impact | 184.0 | 0.053516 | 0.133790 | 0.0 | 0.00000 | 0.0110 | 0.03300 | 0.962 |