ROBOT Report - genepio

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Types of errors

LevelNumber of errors
ERROR158
WARN496
INFO54
1

Error breakdown

RuleNumber of errors
deprecated_boolean_datatype19
deprecated_class_reference1
duplicate_definition68
duplicate_label8
missing_label13
misused_obsolete_label20
misused_replaced_by21
multiple_labels8
equivalent_class_axiom_no_genus1
invalid_xref94
missing_definition398
missing_obsolete_label3
lowercase_definition54

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Row Level Rule Name Subject Property Value
1 ERROR deprecated_boolean_datatype GENEPIO:0001541 owl:deprecated TRUE
2 ERROR deprecated_boolean_datatype GENEPIO:0001935 owl:deprecated TRUE
3 ERROR deprecated_boolean_datatype GENEPIO:0001939 owl:deprecated TRUE
4 ERROR deprecated_boolean_datatype GENEPIO:0100019 owl:deprecated TRUE
5 ERROR deprecated_boolean_datatype GENEPIO:0100022 owl:deprecated TRUE
6 ERROR deprecated_boolean_datatype GENEPIO:0100071 owl:deprecated TRUE
7 ERROR deprecated_boolean_datatype GENEPIO:0100087 owl:deprecated TRUE
8 ERROR deprecated_boolean_datatype GENEPIO:0100107 owl:deprecated TRUE
9 ERROR deprecated_boolean_datatype GENEPIO:0100108 owl:deprecated TRUE
10 ERROR deprecated_boolean_datatype GENEPIO:0100114 owl:deprecated TRUE
11 ERROR deprecated_boolean_datatype GENEPIO:0100116 owl:deprecated TRUE
12 ERROR deprecated_boolean_datatype GENEPIO:0100117 owl:deprecated TRUE
13 ERROR deprecated_boolean_datatype GENEPIO:0100118 owl:deprecated TRUE
14 ERROR deprecated_boolean_datatype GENEPIO:0100119 owl:deprecated TRUE
15 ERROR deprecated_boolean_datatype GENEPIO:0100125 owl:deprecated TRUE
16 ERROR deprecated_boolean_datatype GENEPIO:0100127 owl:deprecated TRUE
17 ERROR deprecated_boolean_datatype GENEPIO:0100132 owl:deprecated TRUE
18 ERROR deprecated_boolean_datatype GENEPIO:0100246 owl:deprecated TRUE
19 ERROR deprecated_boolean_datatype GENEPIO:0100297 owl:deprecated TRUE
20 ERROR deprecated_class_reference GENEPIO:0002178 rdfs:subClassOf OBI:0000658
21 ERROR duplicate_definition GENEPIO:0002101 IAO:0000115 This is the minimum concentration of a drug applied during an an assay.@en
22 ERROR duplicate_definition GENEPIO:0002170 IAO:0000115 This is the minimum concentration of a drug applied during an an assay.@en
23 ERROR duplicate_definition GENEPIO:0001477 IAO:0000115 The user-specified filename of the r2 FASTQ file.@en
24 ERROR duplicate_definition GENEPIO:0001479 IAO:0000115 The user-specified filename of the r2 FASTQ file.@en
25 ERROR duplicate_definition GENEPIO:0001476 IAO:0000115 The user-specified filename of the r1 FASTQ file.@en
26 ERROR duplicate_definition GENEPIO:0001478 IAO:0000115 The user-specified filename of the r1 FASTQ file.@en
27 ERROR duplicate_definition GENEPIO:0001507 IAO:0000115 The name of the gene used in the diagnostic RT-PCR test.@en
28 ERROR duplicate_definition GENEPIO:0001510 IAO:0000115 The name of the gene used in the diagnostic RT-PCR test.@en
29 ERROR duplicate_definition GENEPIO:0001513 IAO:0000115 The name of the gene used in the diagnostic RT-PCR test.@en
30 ERROR duplicate_definition GENEPIO:0001508 IAO:0000115 The name and version number of the protocol used for diagnostic marker amplification.@en
31 ERROR duplicate_definition GENEPIO:0001511 IAO:0000115 The name and version number of the protocol used for diagnostic marker amplification.@en
32 ERROR duplicate_definition GENEPIO:0001514 IAO:0000115 The name and version number of the protocol used for diagnostic marker amplification.@en
33 ERROR duplicate_definition GENEPIO:0001509 IAO:0000115 The cycle threshold (Ct) value result from a diagnostic SARS-CoV-2 RT-PCR test.@en
34 ERROR duplicate_definition GENEPIO:0001512 IAO:0000115 The cycle threshold (Ct) value result from a diagnostic SARS-CoV-2 RT-PCR test.@en
35 ERROR duplicate_definition GENEPIO:0001515 IAO:0000115 The cycle threshold (Ct) value result from a diagnostic SARS-CoV-2 RT-PCR test.@en
36 ERROR duplicate_definition GENEPIO:0100062 IAO:0000115 Persistent blue discoloration of the lips.@en
37 ERROR duplicate_definition GENEPIO:0100064 IAO:0000115 Persistent blue discoloration of the lips.@en
38 ERROR duplicate_definition GENEPIO:0002120 IAO:0000600 NOTE: there are different types of tubes with coloured caps indicating different preservatives etc.@en
39 ERROR duplicate_definition GENEPIO:0002121 IAO:0000600 NOTE: there are different types of tubes with coloured caps indicating different preservatives etc.@en
40 ERROR duplicate_definition GENEPIO:0000117 IAO:0000600 Note that this is expressed in a particular format in some standards.@en
41 ERROR duplicate_definition GENEPIO:0002097 IAO:0000600 Note that this is expressed in a particular format in some standards.@en
42 ERROR duplicate_definition GENEPIO:0001617 IAO:0000115 Name of disease in a subject that is related to a given investigation, study and/or specimen.@en
43 ERROR duplicate_definition GENEPIO:0002165 IAO:0000115 Name of disease in a subject that is related to a given investigation, study and/or specimen.@en
44 ERROR duplicate_definition GENEPIO:0002180 IAO:0000115 Country where isolate was collected@en
45 ERROR duplicate_definition GENEPIO:0002182 IAO:0000115 Country where isolate was collected@en
46 ERROR duplicate_definition GENEPIO:0001633 IAO:0000115 Contig L50 is the number of contigs equal to or longer than contig N50. The length of the assembly itself is used in the calculation.@en
47 ERROR duplicate_definition GENEPIO:0001773 IAO:0000115 Contig L50 is the number of contigs equal to or longer than contig N50. The length of the assembly itself is used in the calculation.@en
48 ERROR duplicate_definition GENEPIO:0100014 IAO:0000115 A travel-associated surveillance strategy in which individuals are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms.@en
49 ERROR duplicate_definition GENEPIO:0100018 IAO:0000115 A travel-associated surveillance strategy in which individuals are selected if they have a travel history outside of the reporting country in a specified number of days before onset of symptoms.@en
50 ERROR duplicate_definition GENEPIO:0001783 IAO:0000115 A travel destination is a destination city (or populated place of some scale) which a given human has travelled to on a particular trip.@en
51 ERROR duplicate_definition GENEPIO:0002173 IAO:0000115 A travel destination is a destination city (or populated place of some scale) which a given human has travelled to on a particular trip.@en
52 ERROR duplicate_definition GENEPIO:0001610 IAO:0000115 A subject age is the age since birth of a given organism that is involved in an investigation or study at a given time.@en
53 ERROR duplicate_definition GENEPIO:0002156 IAO:0000115 A subject age is the age since birth of a given organism that is involved in an investigation or study at a given time.@en
54 ERROR duplicate_definition GENEPIO:0000134 IAO:0000115 A specimen source substance is an organism substance or food product or environmental substance from which the specimen was extracted.@en
55 ERROR duplicate_definition GENEPIO:0002174 IAO:0000115 A specimen source substance is an organism substance or food product or environmental substance from which the specimen was extracted.@en
56 ERROR duplicate_definition GENEPIO:0100548 IAO:0000115 A sampling strategy in which samples are taken during real-life experiments which test directly whether proposed interventions actually work.@en
57 ERROR duplicate_definition GENEPIO:0100550 IAO:0000115 A sampling strategy in which samples are taken during real-life experiments which test directly whether proposed interventions actually work.@en
58 ERROR duplicate_definition GENEPIO:0002044 IAO:0000115 A MIC test measurement resulting from a laboratory dilution method.@en
59 ERROR duplicate_definition GENEPIO:0002153 IAO:0000115 A MIC test measurement resulting from a laboratory dilution method.@en
60 ERROR duplicate_definition GENEPIO:0002110 IAO:0000115 A MIC test measurement resulting from a laboratory diffusion method.@en
61 ERROR duplicate_definition GENEPIO:0002150 IAO:0000115 A MIC test measurement resulting from a laboratory diffusion method.@en
62 ERROR duplicate_definition GENEPIO:0100165 IAO:0000115 A gene encoding the nonstructural protein 8 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).@en
63 ERROR duplicate_definition GENEPIO:0100178 IAO:0000115 A gene encoding the nonstructural protein 8 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).@en
64 ERROR duplicate_definition GENEPIO:0100163 IAO:0000115 A gene encoding the nonstructural protein 6 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).@en
65 ERROR duplicate_definition GENEPIO:0100175 IAO:0000115 A gene encoding the nonstructural protein 6 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).@en
66 ERROR duplicate_definition GENEPIO:0100124 IAO:0000115 A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and has an output capacity of 1.65-7.5 Gb.@en
67 ERROR duplicate_definition GENEPIO:0100126 IAO:0000115 A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and has an output capacity of 1.65-7.5 Gb.@en
68 ERROR duplicate_definition GENEPIO:0000145 IAO:0000115 @en
69 ERROR duplicate_definition GENEPIO:0000146 IAO:0000115 @en
70 ERROR duplicate_definition GENEPIO:0000151 IAO:0000115 @en
71 ERROR duplicate_definition GENEPIO:0000152 IAO:0000115 @en
72 ERROR duplicate_definition GENEPIO:0000153 IAO:0000115 @en
73 ERROR duplicate_definition GENEPIO:0000154 IAO:0000115 @en
74 ERROR duplicate_definition GENEPIO:0000155 IAO:0000115 @en
75 ERROR duplicate_definition GENEPIO:0001074 IAO:0000115 @en
76 ERROR duplicate_definition GENEPIO:0001078 IAO:0000115 @en
77 ERROR duplicate_definition GENEPIO:0001083 IAO:0000115 @en
78 ERROR duplicate_definition GENEPIO:0001084 IAO:0000115 @en
79 ERROR duplicate_definition GENEPIO:0001085 IAO:0000115 @en
80 ERROR duplicate_definition GENEPIO:0001086 IAO:0000115 @en
81 ERROR duplicate_definition GENEPIO:0001087 IAO:0000115 @en
82 ERROR duplicate_definition GENEPIO:0001088 IAO:0000115 @en
83 ERROR duplicate_definition GENEPIO:0001089 IAO:0000115 @en
84 ERROR duplicate_definition GENEPIO:0001090 IAO:0000115 @en
85 ERROR duplicate_definition GENEPIO:0001091 IAO:0000115 @en
86 ERROR duplicate_definition GENEPIO:0001092 IAO:0000115 @en
87 ERROR duplicate_definition GENEPIO:0002091 IAO:0000115 @en
88 ERROR duplicate_definition GENEPIO:0002092 IAO:0000115 @en
89 ERROR duplicate_label GENEPIO:0001503 rdfs:label variant designation@en
90 ERROR duplicate_label GENEPIO:0100293 rdfs:label variant designation@en
91 ERROR duplicate_label GENEPIO:0001253 rdfs:label specimen processing@en
92 ERROR duplicate_label GENEPIO:0100286 rdfs:label specimen processing@en
93 ERROR duplicate_label GENEPIO:0001541 rdfs:label parent-guardian role@en
94 ERROR duplicate_label GENEPIO:0100269 rdfs:label parent-guardian role@en
95 ERROR duplicate_label GENEPIO:0001817 rdfs:label NIFSTD@en
96 ERROR duplicate_label GENEPIO:0001820 rdfs:label NIFSTD@en
97 ERROR missing_label GENEPIO:0000098 rdfs:label
98 ERROR missing_label GENEPIO:0000099 rdfs:label
99 ERROR missing_label GENEPIO:0000100 rdfs:label
100 ERROR missing_label GENEPIO:0000101 rdfs:label
101 ERROR missing_label GENEPIO:0000102 rdfs:label
102 ERROR missing_label GENEPIO:0000116 rdfs:label
103 ERROR missing_label GENEPIO:0001367 rdfs:label
104 ERROR missing_label GENEPIO:0001368 rdfs:label
105 ERROR missing_label GENEPIO:0001369 rdfs:label
106 ERROR missing_label GENEPIO:0001370 rdfs:label
107 ERROR missing_label GENEPIO:0001372 rdfs:label
108 ERROR missing_label GENEPIO:0001373 rdfs:label
109 ERROR missing_label GENEPIO:0001433 rdfs:label
110 ERROR misused_obsolete_label GENEPIO:0001541 rdfs:label obsolete: parent-guardian role@en
111 ERROR misused_obsolete_label GENEPIO:0001552 rdfs:label obsolete: household exposure@en
112 ERROR misused_obsolete_label GENEPIO:0001935 rdfs:label obsolete: Ion Torrent PGM@en
113 ERROR misused_obsolete_label GENEPIO:0001939 rdfs:label obsolete: Illumina HiSeq Sequencer@en
114 ERROR misused_obsolete_label GENEPIO:0100019 rdfs:label obsolete: cluster/outbreak investigation strategy@en
115 ERROR misused_obsolete_label GENEPIO:0100022 rdfs:label obsolete: research strategy@en
116 ERROR misused_obsolete_label GENEPIO:0100071 rdfs:label obsolete: prostration@en
117 ERROR misused_obsolete_label GENEPIO:0100087 rdfs:label obsolete: cardiac injury@en
118 ERROR misused_obsolete_label GENEPIO:0100107 rdfs:label obsolete: Illumina Genome Analyzer II@en
119 ERROR misused_obsolete_label GENEPIO:0100108 rdfs:label obsolete: Illumina Genome Analyzer IIx@en
120 ERROR misused_obsolete_label GENEPIO:0100114 rdfs:label obsolete: Illumina HiSeq 1000@en
121 ERROR misused_obsolete_label GENEPIO:0100116 rdfs:label obsolete: Illumina HiSeq 2000@en
122 ERROR misused_obsolete_label GENEPIO:0100117 rdfs:label obsolete: Illumina HiSeq 2500@en
123 ERROR misused_obsolete_label GENEPIO:0100118 rdfs:label obsolete: Illumina HiSeq 3000@en
124 ERROR misused_obsolete_label GENEPIO:0100119 rdfs:label obsolete: Illumina HiSeq 4000@en
125 ERROR misused_obsolete_label GENEPIO:0100125 rdfs:label obsolete: Illumina MiSeq@en
126 ERROR misused_obsolete_label GENEPIO:0100127 rdfs:label obsolete: Illumina NextSeq 500@en
127 ERROR misused_obsolete_label GENEPIO:0100132 rdfs:label obsolete: PacBio RS II@en
128 ERROR misused_obsolete_label GENEPIO:0100246 rdfs:label obsolete: indirect contact@en
129 ERROR misused_obsolete_label GENEPIO:0100297 rdfs:label obsolete: cell line cell@en
130 ERROR misused_replaced_by GENEPIO:0001056 IAO:0100001 FOODON:00003357
131 ERROR misused_replaced_by GENEPIO:0001057 IAO:0100001 FOODON:00003356
132 ERROR misused_replaced_by GENEPIO:0001541 IAO:0100001 GENEPIO:0100269
133 ERROR misused_replaced_by GENEPIO:0001935 IAO:0100001 GENEPIO:0100136
134 ERROR misused_replaced_by GENEPIO:0001939 IAO:0100001 GENEPIO:0100110
135 ERROR misused_replaced_by GENEPIO:0100019 IAO:0100001 GENEPIO:0100001
136 ERROR misused_replaced_by GENEPIO:0100022 IAO:0100001 GENEPIO:0100003
137 ERROR misused_replaced_by GENEPIO:0100071 IAO:0100001 HP:0025406
138 ERROR misused_replaced_by GENEPIO:0100087 IAO:0100001 GENEPIO:0100074
139 ERROR misused_replaced_by GENEPIO:0100107 IAO:0100001 OBI:0000703
140 ERROR misused_replaced_by GENEPIO:0100108 IAO:0100001 OBI:0002000
141 ERROR misused_replaced_by GENEPIO:0100114 IAO:0100001 OBI:0002022
142 ERROR misused_replaced_by GENEPIO:0100116 IAO:0100001 OBI:0002001
143 ERROR misused_replaced_by GENEPIO:0100117 IAO:0100001 OBI:0002002
144 ERROR misused_replaced_by GENEPIO:0100118 IAO:0100001 OBI:0002048
145 ERROR misused_replaced_by GENEPIO:0100119 IAO:0100001 OBI:0002049
146 ERROR misused_replaced_by GENEPIO:0100125 IAO:0100001 OBI:0002003
147 ERROR misused_replaced_by GENEPIO:0100127 IAO:0100001 OBI:0002021
148 ERROR misused_replaced_by GENEPIO:0100132 IAO:0100001 OBI:0002012
149 ERROR misused_replaced_by GENEPIO:0100246 IAO:0100001 TRANS:0000002
150 ERROR misused_replaced_by GENEPIO:0100297 IAO:0100001 CLO:0000001
151 ERROR multiple_labels GENEPIO:0001541 rdfs:label obsolete: parent-guardian role@en
152 ERROR multiple_labels GENEPIO:0001541 rdfs:label parent-guardian role@en
153 ERROR multiple_labels GENEPIO:0001552 rdfs:label household exposure@en
154 ERROR multiple_labels GENEPIO:0001552 rdfs:label obsolete: household exposure@en
155 ERROR multiple_labels GENEPIO:0002224 rdfs:label IAO:0000428
156 ERROR multiple_labels GENEPIO:0002224 rdfs:label isolate preparation service@en
157 ERROR multiple_labels GENEPIO:0100346 rdfs:label vaccination dose 3 vaccination date example@en
158 ERROR multiple_labels GENEPIO:0100346 rdfs:label vaccination dose 3 vaccine name example@en
159 WARN equivalent_class_axiom_no_genus GENEPIO:0002749 RO:0002353 GENEPIO:0002116
160 WARN invalid_xref GENEPIO:0000019 oboInOwl:hasDbXref NCBI BioSample: intersex@en
161 WARN invalid_xref GENEPIO:0000024 oboInOwl:hasDbXref PulseNet: UploadDate
162 WARN invalid_xref GENEPIO:0000079 oboInOwl:hasDbXref Illumina SampleSheet: Sample_ID
163 WARN invalid_xref GENEPIO:0000079 oboInOwl:hasDbXref PulseNet: SubmittedNumber@en
164 WARN invalid_xref GENEPIO:0001076 oboInOwl:hasDbXref Snomed: Concept 260827009
165 WARN invalid_xref GENEPIO:0001077 oboInOwl:hasDbXref Snomed: Concept 260823008
166 WARN invalid_xref GENEPIO:0001246 oboInOwl:hasDbXref NCBI Biosample: environmental (swab or sampling)@en
167 WARN invalid_xref GENEPIO:0001559 oboInOwl:hasDbXref PulseNet: Outbreak
168 WARN invalid_xref GENEPIO:0001615 oboInOwl:hasDbXref NCBI BioSample: isolate
169 WARN invalid_xref GENEPIO:0001618 oboInOwl:hasDbXref NCBI Biosample: missing@en
170 WARN invalid_xref GENEPIO:0001620 oboInOwl:hasDbXref NCBI Biosample: not collected@en
171 WARN invalid_xref GENEPIO:0001660 oboInOwl:hasDbXref NCBI BioSample: neuter
172 WARN invalid_xref GENEPIO:0001661 oboInOwl:hasDbXref NCBI BioSample: 'pooled male and female'
173 WARN invalid_xref GENEPIO:0001666 oboInOwl:hasDbXref INSDC
174 WARN invalid_xref GENEPIO:0001706 oboInOwl:hasDbXref NCBI BioSample: collection_code
175 WARN invalid_xref GENEPIO:0001719 oboInOwl:hasDbXref SNOMED: http://www.snomedbrowser.com/Codes/Details/272405002
176 WARN invalid_xref GENEPIO:0001782 oboInOwl:hasDbXref PulseNet: UploadModifiedDate
177 WARN invalid_xref GENEPIO:0001813 oboInOwl:hasDbXref ITIS
178 WARN invalid_xref GENEPIO:0001818 oboInOwl:hasDbXref MSH
179 WARN invalid_xref GENEPIO:0001819 oboInOwl:hasDbXref NCI_Thesaurus
180 WARN invalid_xref GENEPIO:0001819 oboInOwl:hasDbXref NCIt
181 WARN invalid_xref GENEPIO:0001821 oboInOwl:hasDbXref SNOMEDCT
182 WARN invalid_xref GENEPIO:0001822 oboInOwl:hasDbXref FAO ASFIS
183 WARN invalid_xref GENEPIO:0001837 oboInOwl:hasDbXref AHA HIPPA
184 WARN invalid_xref GENEPIO:0001838 oboInOwl:hasDbXref PMID
185 WARN invalid_xref GENEPIO:0001839 oboInOwl:hasDbXref PulseNet
186 WARN invalid_xref GENEPIO:0001840 oboInOwl:hasDbXref AHA Hippa: Good@en
187 WARN invalid_xref GENEPIO:0001923 oboInOwl:hasDbXref NCBI SRA: ILLUMINA
188 WARN invalid_xref GENEPIO:0001924 oboInOwl:hasDbXref NCBI SRA: COMPLETE_GENOMICS
189 WARN invalid_xref GENEPIO:0001926 oboInOwl:hasDbXref NCBI SRA: LS454
190 WARN invalid_xref GENEPIO:0001927 oboInOwl:hasDbXref NCBI SRA: PACBIO_SMRT
191 WARN invalid_xref GENEPIO:0001928 oboInOwl:hasDbXref NCBI SRA: AB SOLiD 4hq
192 WARN invalid_xref GENEPIO:0001929 oboInOwl:hasDbXref NCBI SRA: AB SOLiD 5500
193 WARN invalid_xref GENEPIO:0001930 oboInOwl:hasDbXref NCBI SRA: AB SOLiD 5500xl
194 WARN invalid_xref GENEPIO:0001931 oboInOwl:hasDbXref NCBI SRA: AB SOLiD PI System
195 WARN invalid_xref GENEPIO:0001932 oboInOwl:hasDbXref NCBI SRA: AB SOLiD System 2.0
196 WARN invalid_xref GENEPIO:0001933 oboInOwl:hasDbXref NCBI SRA: AB SOLiD System 3.0
197 WARN invalid_xref GENEPIO:0001935 oboInOwl:hasDbXref NCBI SRA: Ion Torrent PGM
198 WARN invalid_xref GENEPIO:0001936 oboInOwl:hasDbXref NCBI SRA: 454 GS FLX Titanium
199 WARN invalid_xref GENEPIO:0001937 oboInOwl:hasDbXref NCBI SRA: 454 GS
200 WARN invalid_xref GENEPIO:0001938 oboInOwl:hasDbXref NCBI SRA: 454 GS Junior