ROBOT Report - obi

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Types of errors

LevelNumber of errors
WARN85
INFO85
activity)@en" 1

Error breakdown

RuleNumber of errors
duplicate_exact_synonym28
duplicate_label_synonym9
equivalent_class_axiom_no_genus48
lowercase_definition85

Click on any term to direct to the term page.

Row Level Rule Name Subject Property Value
1 WARN duplicate_exact_synonym OBI:0002325 IAO:0000118 Stage IVB
2 WARN duplicate_exact_synonym OBI:0002340 IAO:0000118 Stage IVB
3 WARN duplicate_exact_synonym OBI:0002324 IAO:0000118 Stage IVA
4 WARN duplicate_exact_synonym OBI:0002339 IAO:0000118 Stage IVA
5 WARN duplicate_exact_synonym OBI:0002322 IAO:0000118 Stage IIIB
6 WARN duplicate_exact_synonym OBI:0002338 IAO:0000118 Stage IIIB
7 WARN duplicate_exact_synonym OBI:0002321 IAO:0000118 Stage IIIA
8 WARN duplicate_exact_synonym OBI:0002337 IAO:0000118 Stage IIIA
9 WARN duplicate_exact_synonym OBI:0002319 IAO:0000118 Stage IIB
10 WARN duplicate_exact_synonym OBI:0002336 IAO:0000118 Stage IIB
11 WARN duplicate_exact_synonym OBI:0002318 IAO:0000118 Stage IIA
12 WARN duplicate_exact_synonym OBI:0002333 IAO:0000118 Stage IIA
13 WARN duplicate_exact_synonym OBI:0002270 IAO:0000118 pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)
14 WARN duplicate_exact_synonym OBI:0002279 IAO:0000118 pN: Pathologic spread colon lymph nodes (AJCC 7th Edition)
15 WARN duplicate_exact_synonym OBI:0002792 IAO:0000118 hospital gown
16 WARN duplicate_exact_synonym OBI:0002796 IAO:0000118 hospital gown
17 WARN duplicate_exact_synonym OBI:0002209 IAO:0000118 G4
18 WARN duplicate_exact_synonym OBI:0002223 IAO:0000118 G4
19 WARN duplicate_exact_synonym OBI:0002208 IAO:0000118 G3
20 WARN duplicate_exact_synonym OBI:0002222 IAO:0000118 G3
21 WARN duplicate_exact_synonym OBI:0002207 IAO:0000118 G2
22 WARN duplicate_exact_synonym OBI:0002221 IAO:0000118 G2
23 WARN duplicate_exact_synonym OBI:0002206 IAO:0000118 G1
24 WARN duplicate_exact_synonym OBI:0002220 IAO:0000118 G1
25 WARN duplicate_exact_synonym OBI:0000521 IAO:0000118 FID
26 WARN duplicate_exact_synonym OBI:0000637 IAO:0000118 FID
27 WARN duplicate_exact_synonym OBI:0000787 IAO:0000118 AT-III assay
28 WARN duplicate_exact_synonym OBI:0000805 IAO:0000118 AT-III assay
29 WARN duplicate_label_synonym OBI:0000485 IAO:0000118 chromatography instrument
30 WARN duplicate_label_synonym OBI:0000566 IAO:0000118 NMR instrument
31 WARN duplicate_label_synonym OBI:0002163 IAO:0000118 DNAse footprinting assay
32 WARN duplicate_label_synonym OBI:0002809 IAO:0000118 surgical N95 respirator
33 WARN duplicate_label_synonym OBI:0002824 IAO:0000118 surface wipe
34 WARN duplicate_label_synonym OBI:0002937 IAO:0000118 outlet window trap
35 WARN duplicate_label_synonym OBI:0002988 IAO:0000118 specimen collection duration
36 WARN duplicate_label_synonym OBI:0200082 IAO:0000118 longitudinal data analysis@en
37 WARN duplicate_label_synonym OBI:0400121 IAO:0000118 molecular crosslinker
38 WARN equivalent_class_axiom_no_genus OBI:0000023 OBI:0000312 OBI:0000663
39 WARN equivalent_class_axiom_no_genus OBI:0000070 OBI:0000417 OBI:0000441
40 WARN equivalent_class_axiom_no_genus OBI:0000094 OBI:0000417 OBI:0000456
41 WARN equivalent_class_axiom_no_genus OBI:0000274 OBI:0000417 OBI:0000434
42 WARN equivalent_class_axiom_no_genus OBI:0000451 OBI:0000312 OBI:0200169
43 WARN equivalent_class_axiom_no_genus OBI:0000457 OBI:0000417 OBI:0000458
44 WARN equivalent_class_axiom_no_genus OBI:0000648 OBI:0000312 OBI:0200175
45 WARN equivalent_class_axiom_no_genus OBI:0000649 OBI:0000312 OBI:0200184
46 WARN equivalent_class_axiom_no_genus OBI:0000650 OBI:0000417 OBI:0200031
47 WARN equivalent_class_axiom_no_genus OBI:0000652 OBI:0000417 OBI:0000686
48 WARN equivalent_class_axiom_no_genus OBI:0000656 OBI:0000312 OBI:0200072
49 WARN equivalent_class_axiom_no_genus OBI:0000660 OBI:0000312 OBI:0000666
50 WARN equivalent_class_axiom_no_genus OBI:0000662 OBI:0000312 OBI:0000668
51 WARN equivalent_class_axiom_no_genus OBI:0000668 OBI:0000417 OBI:0200186
52 WARN equivalent_class_axiom_no_genus OBI:0000673 OBI:0000417 OBI:0000675
53 WARN equivalent_class_axiom_no_genus OBI:0000674 OBI:0000312 OBI:0200181
54 WARN equivalent_class_axiom_no_genus OBI:0000676 OBI:0000312 OBI:0200182
55 WARN equivalent_class_axiom_no_genus OBI:0000679 OBI:0000312 OBI:0200170
56 WARN equivalent_class_axiom_no_genus OBI:0000707 OBI:0000417 OBI:0000704
57 WARN equivalent_class_axiom_no_genus OBI:0000792 OBI:0000417 OBI:0200188
58 WARN equivalent_class_axiom_no_genus OBI:0000838 OBI:0000417 OBI:0000806
59 WARN equivalent_class_axiom_no_genus OBI:0000925 RO:0000053 OBI:1110093
60 WARN equivalent_class_axiom_no_genus OBI:0000939 OBI:0000417 OBI:0000962
61 WARN equivalent_class_axiom_no_genus OBI:0001425 BFO:0000051 OBI:0001398
62 WARN equivalent_class_axiom_no_genus OBI:0001505 OBI:0000417 OBI:0000796
63 WARN equivalent_class_axiom_no_genus OBI:0001834 OBI:0000299 IAO:0000144
64 WARN equivalent_class_axiom_no_genus OBI:0002599 OBI:0000312 OBI:0002600
65 WARN equivalent_class_axiom_no_genus OBI:0200000 OBI:0000417 OBI:0200166
66 WARN equivalent_class_axiom_no_genus OBI:0200073 OBI:0000299 OBI:0001265
67 WARN equivalent_class_axiom_no_genus OBI:0200085 OBI:0000417 OBI:0200197
68 WARN equivalent_class_axiom_no_genus OBI:0200086 OBI:0000417 OBI:0200180
69 WARN equivalent_class_axiom_no_genus OBI:0200089 OBI:0000417 OBI:0000791
70 WARN equivalent_class_axiom_no_genus OBI:0200163 OBI:0000299 OBI:0001442
71 WARN equivalent_class_axiom_no_genus OBI:0200171 OBI:0000417 OBI:0200172
72 WARN equivalent_class_axiom_no_genus OBI:0200185 OBI:0000417 OBI:0200183
73 WARN equivalent_class_axiom_no_genus OBI:0200187 OBI:0000417 OBI:0200081
74 WARN equivalent_class_axiom_no_genus OBI:0200194 OBI:0000417 OBI:0200083
75 WARN equivalent_class_axiom_no_genus OBI:0302846 OBI:0000312 OBI:0302900
76 WARN equivalent_class_axiom_no_genus OBI:0302867 OBI:0000312 OBI:0302910
77 WARN equivalent_class_axiom_no_genus OBI:0302868 OBI:0000312 OBI:0200029
78 WARN equivalent_class_axiom_no_genus OBI:0600014 OBI:0000417 OBI:0000639
79 WARN equivalent_class_axiom_no_genus OBI:1110001 RO:0000053 OBI:1110045
80 WARN equivalent_class_axiom_no_genus OBI:1110008 BFO:0000055 OBI:1110040
81 WARN equivalent_class_axiom_no_genus OBI:1110012 BFO:0000055 OBI:1110049
82 WARN equivalent_class_axiom_no_genus OBI:1110023 RO:0000087 OBI:1110082
83 WARN equivalent_class_axiom_no_genus OBI:1110034 RO:0000087 OBI:0000237
84 WARN equivalent_class_axiom_no_genus OBI:1110108 RO:0000087 OBI:0000319
85 WARN equivalent_class_axiom_no_genus OBI:1110109 RO:0000087 OBI:0000444
86 INFO lowercase_definition OBI:0000006 IAO:0000115 the role of a human being that is realized by enforcing regulations to ensure consumer safety
87 INFO lowercase_definition OBI:0000014 IAO:0000115 a regulatory role involved with making and/or enforcing relevant legislation and governmental orders@en
88 INFO lowercase_definition OBI:0000017 IAO:0000115 a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body.@en
89 INFO lowercase_definition OBI:0000018 IAO:0000115 a role realized through the process of supplying materials such as animal subjects, reagents or other materials used in an investigation.@en
90 INFO lowercase_definition OBI:0000020 IAO:0000115 a worker role of carrying out the study according to the protocol document or study plan delivered by the PI, under the control of the study director. This role cannot make decisions about the study execution@en
91 INFO lowercase_definition OBI:0000025 IAO:0000115 a role inhering in a material entity that is realized when characteristics or responses elicited by the substance are used for comparison or reference.@en
92 INFO lowercase_definition OBI:0000029 IAO:0000115 pellet role is a role which inheres in a material entity and is realized by a material separation process using gravitational force generated by a centrifuge in which the material bearing the pellet role is the heavier or heaviest component of the output material..@en
93 INFO lowercase_definition OBI:0000032 IAO:0000115 a worker role comprised of handling the administrative duties of a trial or study.@en
94 INFO lowercase_definition OBI:0000034 IAO:0000115 supernatant role is a role which inheres in a material entity and is realized by a material separation process using gravitational force in which the material bearing the supernatant role is the liquid component of the output material.
95 INFO lowercase_definition OBI:0000040 IAO:0000115 a role borne by a molecular entity and is realized in a process of absorption by an organism alters, or effects (or is assumed to effect) a function(s) which inhere in an organism@en
96 INFO lowercase_definition OBI:0000043 IAO:0000115 is the transplantation of living cells, tissues or \norgans from one species to another such as from pigs to humans@en
97 INFO lowercase_definition OBI:0000057 IAO:0000115 is the transplantation of organs between members of the same species.@en
98 INFO lowercase_definition OBI:0000060 IAO:0000115 a responsible party involved in planning, overseeing the conduct of a study or study component, and interpreting data from a study@en
99 INFO lowercase_definition OBI:0000064 IAO:0000115 "a reference role in which the characteristics or responses elicited by the substance playing the reference substance role are used to establish a \""100%\"" response"
100 INFO lowercase_definition OBI:0000065 IAO:0000115 triton X100 is a chemical entity which belongs to the group of The pluronics which are triblock copolymers of ethylene oxide and propylene oxide. Triton x-100 is_used_as detergent due to its non-ionic surfactant properties@en
101 INFO lowercase_definition OBI:0000066 IAO:0000115 a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).@en
102 INFO lowercase_definition OBI:0000067 IAO:0000115 a role that inheres in a material entity that is realized in an assay in which data is generated about the bearer of the evaluant role@en
103 INFO lowercase_definition OBI:0000068 IAO:0000115 a study personnel role played by a party who reports the outcome of a study component@en
104 INFO lowercase_definition OBI:0000075 IAO:0000115 diagnosis is an assessment of a disease or injury, its likely prognosis and treatment.@en
105 INFO lowercase_definition OBI:0000076 IAO:0000115 a process which is external in origin to the investigation that has an impact on the outcome.@en
106 INFO lowercase_definition OBI:0000079 IAO:0000115 a processed material that provides the needed nourishment for microorganisms or cells grown in vitro.
107 INFO lowercase_definition OBI:0000089 IAO:0000115 a regulator involved with making and enforcing legislation and governmental orders relevant to chemical manufacture@en
108 INFO lowercase_definition OBI:0000091 IAO:0000115 a role which inheres in a molecular entity and is realized by the process of recording or registering a stimulus.
109 INFO lowercase_definition OBI:0000092 IAO:0000115 a role of which inheres in a Homo sapiens and realized during administration and oversight of the daily activities of Institutional Review Boards (IRBs) in the USA
110 INFO lowercase_definition OBI:0000093 IAO:0000115 a role which inheres in a person and is realized by the process of being under the care of a physician or health care provider@en
111 INFO lowercase_definition OBI:0000102 IAO:0000115 a study personnel role played by a party who is accountable for the execution of a study component and can make decisions about the conduct of the study@en
112 INFO lowercase_definition OBI:0000103 IAO:0000115 a responsible party role played by a person responsible for the overall conduct of a study@en
113 INFO lowercase_definition OBI:0000105 IAO:0000115 a protocol application to replace an organ or tissue of an organism@en
114 INFO lowercase_definition OBI:0000109 IAO:0000115 a biological vector role is a material to be added role that is realized by the process of transmitting material to the organism that is the target of the transmission.
115 INFO lowercase_definition OBI:0000110 IAO:0000115 the role of a dye that is realized when the dye is used in an experiment to measure the pH in a material entity
116 INFO lowercase_definition OBI:0000112 IAO:0000115 a role borne by a material entity that is gained during a specimen collection process and that can be realized by use of the specimen in an investigation@en
117 INFO lowercase_definition OBI:0000116 IAO:0000115 a personnel role played by a party who executes a component of the study plan; this can occur before, during, after or outside the study timeline@en
118 INFO lowercase_definition OBI:0000143 IAO:0000115 a reference participant role which is realized by making the reference to qualities at the start of the study or intervention
119 INFO lowercase_definition OBI:0000144 IAO:0000115 a trial monitor role charged recommending whether to continue, modify, or end the trial@en
120 INFO lowercase_definition OBI:0000145 IAO:0000115 a worker role of being responsible for making the histopathology diagnoses associated with data from a study; this activity occurs outside the study timeline@en
121 INFO lowercase_definition OBI:0000154 IAO:0000115 the role of a organization that is realized by members reviewing study designs for their agreement with regulations
122 INFO lowercase_definition OBI:0000158 IAO:0000115 an eSource document is a digital document consisting of a logical collection of Source data and other eSource documents that can be presented in an ordered way and capture the time of completion, change, and any signatures@en
123 INFO lowercase_definition OBI:0000161 IAO:0000115 a role realized when a participant serves as reference to itself
124 INFO lowercase_definition OBI:0000163 IAO:0000115 a molecular label role which inheres in a material entity which is realized by the process of radioactivity detection@en
125 INFO lowercase_definition OBI:0000169 IAO:0000115 a negative reference substance is a reference role in which the substance playing the reference substance role is physically similar in appearance to the test substance
126 INFO lowercase_definition OBI:0000171 IAO:0000115 is the transplantation of tissue from one part of \nthe body to another in the same individual. )@en
127 INFO lowercase_definition OBI:0000174 IAO:0000115 a study population role where the bearer is a population of material entities and the role is realized in the implementation of a study design wherein the entities bearing the study population role are observed or subjected to intervention according to the study design and are biological replicates, i.e. they receive the same treatment under the protocol@en
128 INFO lowercase_definition OBI:0000181 IAO:0000115 a population is a collection of individuals from the same taxonomic class living, counted or sampled at a particular site or in a particular area@en
129 INFO lowercase_definition OBI:0000188 IAO:0000115 a worker role comprised of providing a confirmed and consensus diagnosis for histopathology results obtained during the investigation@en
130 INFO lowercase_definition OBI:0000196 IAO:0000115 a role which inheres in a Homo sapiens and is realized during a clinical trial - the impartial witness is independent of the trial and cannot be unfairly influenced by people involved with the trial
131 INFO lowercase_definition OBI:0000198 IAO:0000115 a reference participant role realized by equivalent treatment of participants
132 INFO lowercase_definition OBI:0000204 IAO:0000115 a role that inheres in a material entity and is realized in the use of that material entity by an organism when it is used in that organism's metabolism and provides nourishment.@en
133 INFO lowercase_definition OBI:0000207 IAO:0000115 a worker role of providing medical care either within or outside the study timeline
134 INFO lowercase_definition OBI:0000214 IAO:0000115 "a reference role in which the characteristics or responses elicited by the substance playing the reference substance role are used to establish a \""no effect\"" response"
135 INFO lowercase_definition OBI:0000215 IAO:0000115 a role which inheres in a human or organization who are able subject to applicable law to consent, on behalf of a prospective subject, to the subject`s participation in as clinical trial.
136 INFO lowercase_definition OBI:0000220 IAO:0000115 a reference subject role which inheres in an organism or entity of organismal origin so that the characteristics or responses of the participant playing the reference participant role are used for comparison or reference@en
137 INFO lowercase_definition OBI:0000224 IAO:0000115 a worker role authorized to make study-related decisions and carry out tasks related to the study; this role occurs during the study timeline@en
138 INFO lowercase_definition OBI:0000227 IAO:0000115 a documenting process to encode an information entity into a digital document@en
139 INFO lowercase_definition OBI:0000231 IAO:0000115 a material processing that digests the fraction of input material that is susceptible to that enzyme@en
140 INFO lowercase_definition OBI:0000234 IAO:0000115 a worker role that analyzes data obtained during a trial or study; this role occurs after the trial or study is completed or terminated.@en
141 INFO lowercase_definition OBI:0000243 IAO:0000115 a responsible party role involved with any of the following activities: initiating, managing and funding a study@en
142 INFO lowercase_definition OBI:0000248 IAO:0000115 a role that inheres in a material entity and is realized in the use of that material entity by lab animal to provide all needed nourishment.
143 INFO lowercase_definition OBI:0000249 IAO:0000115 technical replicate role is realized when two portions from one evaluant are used in replicate runs of an assay
144 INFO lowercase_definition OBI:0000252 IAO:0000115 a cohort role is a biological replicate role played by a group of study participants who share a common characteristic of interest to the study.@en
145 INFO lowercase_definition OBI:0000273 IAO:0000115 a regulator involved with making and enforcing legislation and governmental orders relevant to the development, testing, manufacture and use of food, drugs and medical devices@en
146 INFO lowercase_definition OBI:0000274 IAO:0000115 is a process with the objective to place a material entity bearing the 'material to be added role' into a material bearing the 'target of material addition role'.@en
147 INFO lowercase_definition OBI:0000278 IAO:0000115 a part of an occurrence of a disease process which is associated with position in the normal progression of the disease@en
148 INFO lowercase_definition OBI:0000281 IAO:0000115 is the injection of a material entity (bearing the administered substance role) into the peritoneum (bearing the target role) of an organism using a syringe
149 INFO lowercase_definition OBI:0000286 IAO:0000115 a precipitate is a material entity which is output of a precipitation process@en
150 INFO lowercase_definition OBI:0000292 IAO:0000115 has_feature_value datatype property is used to describe the feature values which the feature class can contain, for example has_base can have feature values of nonNegativeInteger values.@en
151 INFO lowercase_definition OBI:0000296 IAO:0000115 enrollment is a process of identifying a set of objects for further use in an investigation based on a set of criteria or rules
152 INFO lowercase_definition OBI:0000304 IAO:0000115 "c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the \""Manufacturer Role\"", and those people/and or machines were members or of directed by the organization to do this.@en"
153 INFO lowercase_definition OBI:0000310 IAO:0000115 revisit?@en
154 INFO lowercase_definition OBI:0000318 IAO:0000115 a eluate is a material entity which results from an elution, e.g. from a chromatography column. it has as part a material entity with role mobile phase@en
155 INFO lowercase_definition OBI:0000323 IAO:0000115 is the serous membrane that forms the lining of the abdominal cavity
156 INFO lowercase_definition OBI:0000325 IAO:0000115 zip is a format standard of a digital entity that is conformant with the PKWARE .ZIP file format specification (http://www.pkware.com/index.php?option=com_content&task=view&id=59&Itemid=103/)@en
157 INFO lowercase_definition OBI:0000326 IAO:0000115 tar is a format standard of a digital entity that is conformant with the tape archive file format as standardized by POSIX.1-1998, POSIX.1-2001, or any other tar format compliant with the GNU tar specification. (http://www.gnu.org/software/tar/manual/)@en
158 INFO lowercase_definition OBI:0000339 IAO:0000115 a process of creating or modifying a plan specification@en
159 INFO lowercase_definition OBI:0000341 IAO:0000115 histological sample preparation is the preparation of an input tissue via slicing and labeling to make tissue microstructure of interest visible in a future histology assay@en
160 INFO lowercase_definition OBI:0000343 IAO:0000115 a interpreting data that is used to ascribe properties or relations to types based on an observation instance (i.e., on a number of observations or experiences); or to formulate laws based on limited observations of recurring phenomenal patterns.@en
161 INFO lowercase_definition OBI:0000355 IAO:0000115 is an investigation with the goal to test one or more hypothesis@en
162 INFO lowercase_definition OBI:0000356 IAO:0000115 is an investigation in which data is generated and analyzed with the purpose of generating new hypothesis@en
163 INFO lowercase_definition OBI:0000373 IAO:0000115 a physical process of converting an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions. This excludes chemical processes of dissociation.
164 INFO lowercase_definition OBI:0000405 IAO:0000115 a complementary nucleotide probe role which inheres in nucleic acid molecular entity and is realized by the use of the entity bearing the role to initiate chain elongation.
165 INFO lowercase_definition OBI:0000406 IAO:0000115 is double stranded DNA that is the specified output of a polymerase chain reaction@en
166 INFO lowercase_definition OBI:0000409 IAO:0000115 a reference substance role which inheres in nucleic acid material entity and is realized in the process of using the nucleic acid bearing the template role as a reference during synthesis of a reverse copy.
167 INFO lowercase_definition OBI:0000410 IAO:0000115 a plasmid in which extraneous DNA has been inserted.
168 INFO lowercase_definition OBI:0000413 IAO:0000115 a process with the objective to obtain a cell culture in which all cells are in the same stage of the cell cycle@en
169 INFO lowercase_definition OBI:0000416 IAO:0000115 cloning insert role is a role which inheres in DNA or RNA and is realized by the process of being inserted into a cloning vector in a cloning process.@en
170 INFO lowercase_definition OBI:0000419 IAO:0000115 "enzyme and has_function some GO:0003964 (RNA-directed DNA polymerase