ROBOT Report - geno

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Types of errors

LevelNumber of errors
WARN88
INFO6

Error breakdown

RuleNumber of errors
missing_definition76
invalid_xref6
lowercase_definition6
annotation_whitespace2
duplicate_label_synonym2
equivalent_class_axiom_no_genus1
missing_subset_declaration1

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Row Level Rule Name Subject Property Value
0 WARN annotation_whitespace GENO:0000243 IAO:0000116 Created subproperties 'approximates_sequence' and 'resolves to sequence'. Genotypes and other sequence variant artifacts are not always expected to completely specify a sequence, but rather provide some approximation based on available knowledge. The 'resolves_to_sequence' property can be used when the sequence variant artifact is able to completely resolve a sequence, and the 'approximates_sequence' property can be used when it does not.
1 WARN annotation_whitespace GENO:0000244 IAO:0000116 Created subproperties 'approximates_sequence' and 'resolves to sequence'. Genotypes and other sequence variant artifacts are not always expected to completely specify a sequence, but rather provide some approximation based on available knowledge. The 'resolves_to_sequence' property can be used when the sequence variant artifact is able to completely resolve a sequence, and the 'approximates_sequence' property can be used when it does not.
2 WARN duplicate_label_synonym GENO:0000017 IAO:0000118 reference sequence
3 WARN duplicate_label_synonym GENO:0000501 IAO:0000118 wild-type allele
4 WARN equivalent_class_axiom_no_genus GENO:0000960 GENO:0000251 GENO:0000481
5 WARN invalid_xref GENO:0000010 oboInOwl:hasDbXref OBI:genetic population background information
6 WARN invalid_xref GENO:0000014 oboInOwl:hasDbXref SO:0001023 ! allele
7 WARN invalid_xref GENO:0000019 oboInOwl:hasDbXref perhaps not same as SO:sequence collection, as here we explicitly include features that can have an extent of zero (and SO:sequence collection is a collection of regions that have an extent of at least one)
8 WARN invalid_xref GENO:0000033 oboInOwl:hasDbXref SO:0001506 ! variant_genome (definition of SO term here is too vague to know if has same meaning as GENO class here)
9 WARN invalid_xref GENO:0000666 oboInOwl:hasDbXref SO:0000831 (gene member region)
10 WARN invalid_xref GENO:0000870 oboInOwl:hasDbXref SO:0001260 ! sequence_collection
11 WARN missing_definition GENO:0000092 IAO:0000115
12 WARN missing_definition GENO:0000113 IAO:0000115
13 WARN missing_definition GENO:0000118 IAO:0000115
14 WARN missing_definition GENO:0000119 IAO:0000115
15 WARN missing_definition GENO:0000137 IAO:0000115
16 WARN missing_definition GENO:0000139 IAO:0000115
17 WARN missing_definition GENO:0000140 IAO:0000115
18 WARN missing_definition GENO:0000160 IAO:0000115
19 WARN missing_definition GENO:0000220 IAO:0000115
20 WARN missing_definition GENO:0000251 IAO:0000115
21 WARN missing_definition GENO:0000252 IAO:0000115
22 WARN missing_definition GENO:0000351 IAO:0000115
23 WARN missing_definition GENO:0000383 IAO:0000115
24 WARN missing_definition GENO:0000387 IAO:0000115
25 WARN missing_definition GENO:0000393 IAO:0000115
26 WARN missing_definition GENO:0000394 IAO:0000115
27 WARN missing_definition GENO:0000458 IAO:0000115
28 WARN missing_definition GENO:0000495 IAO:0000115
29 WARN missing_definition GENO:0000502 IAO:0000115
30 WARN missing_definition GENO:0000533 IAO:0000115
31 WARN missing_definition GENO:0000575 IAO:0000115
32 WARN missing_definition GENO:0000604 IAO:0000115
33 WARN missing_definition GENO:0000605 IAO:0000115
34 WARN missing_definition GENO:0000606 IAO:0000115
35 WARN missing_definition GENO:0000616 IAO:0000115
36 WARN missing_definition GENO:0000618 IAO:0000115
37 WARN missing_definition GENO:0000619 IAO:0000115
38 WARN missing_definition GENO:0000620 IAO:0000115
39 WARN missing_definition GENO:0000621 IAO:0000115
40 WARN missing_definition GENO:0000622 IAO:0000115
41 WARN missing_definition GENO:0000623 IAO:0000115
42 WARN missing_definition GENO:0000624 IAO:0000115
43 WARN missing_definition GENO:0000625 IAO:0000115
44 WARN missing_definition GENO:0000626 IAO:0000115
45 WARN missing_definition GENO:0000632 IAO:0000115
46 WARN missing_definition GENO:0000633 IAO:0000115
47 WARN missing_definition GENO:0000640 IAO:0000115
48 WARN missing_definition GENO:0000650 IAO:0000115
49 WARN missing_definition GENO:0000651 IAO:0000115
50 WARN missing_definition GENO:0000655 IAO:0000115
51 WARN missing_definition GENO:0000708 IAO:0000115
52 WARN missing_definition GENO:0000719 IAO:0000115
53 WARN missing_definition GENO:0000720 IAO:0000115
54 WARN missing_definition GENO:0000721 IAO:0000115
55 WARN missing_definition GENO:0000722 IAO:0000115
56 WARN missing_definition GENO:0000740 IAO:0000115
57 WARN missing_definition GENO:0000743 IAO:0000115
58 WARN missing_definition GENO:0000761 IAO:0000115
59 WARN missing_definition GENO:0000770 IAO:0000115
60 WARN missing_definition GENO:0000779 IAO:0000115
61 WARN missing_definition GENO:0000780 IAO:0000115
62 WARN missing_definition GENO:0000781 IAO:0000115
63 WARN missing_definition GENO:0000782 IAO:0000115
64 WARN missing_definition GENO:0000790 IAO:0000115
65 WARN missing_definition GENO:0000791 IAO:0000115
66 WARN missing_definition GENO:0000793 IAO:0000115
67 WARN missing_definition GENO:0000794 IAO:0000115
68 WARN missing_definition GENO:0000833 IAO:0000115
69 WARN missing_definition GENO:0000839 IAO:0000115
70 WARN missing_definition GENO:0000840 IAO:0000115
71 WARN missing_definition GENO:0000841 IAO:0000115
72 WARN missing_definition GENO:0000843 IAO:0000115
73 WARN missing_definition GENO:0000844 IAO:0000115
74 WARN missing_definition GENO:0000845 IAO:0000115
75 WARN missing_definition GENO:0000849 IAO:0000115
76 WARN missing_definition GENO:0000867 IAO:0000115
77 WARN missing_definition GENO:0000873 IAO:0000115
78 WARN missing_definition GENO:0000874 IAO:0000115
79 WARN missing_definition GENO:0000887 IAO:0000115
80 WARN missing_definition GENO:0000905 IAO:0000115
81 WARN missing_definition GENO:0000906 IAO:0000115
82 WARN missing_definition GENO:0000909 IAO:0000115
83 WARN missing_definition GENO:0000910 IAO:0000115
84 WARN missing_definition GENO:0000911 IAO:0000115
85 WARN missing_definition GENO:0000912 IAO:0000115
86 WARN missing_definition GENO:0000964 IAO:0000115
87 WARN missing_subset_declaration obo:geno#agr_zyg rdfs:subPropertyOf
88 INFO lowercase_definition GENO:0000111 IAO:0000115 a population of homo sapiens grouped together in virtue of their sharing some commonality (either an inherent attribute or an externally assigned role)
89 INFO lowercase_definition GENO:0000513 IAO:0000115 a sequence attribute of a chromosome or chromosomal region that has been abnormally duplicated or lost, as the result of a non-disjunction event or unbalanced translocation.
90 INFO lowercase_definition GENO:0000602 IAO:0000115 an allelic state where a single allele exists at a particular location in the organellar genome (mitochondrial or plastid) of a cell/organism.
91 INFO lowercase_definition GENO:0000603 IAO:0000115 an allelic state where more than one type of allele exists at a particular location in the organellar genome (mitochondrial or plastid) of a cell/organism.
92 INFO lowercase_definition GENO:0000608 IAO:0000115 a relation to link a single locus complement to its zygosity.
93 INFO lowercase_definition GENO:0000634 IAO:0000115 relation between an molecular agent and its molecular target