ROBOT Report - geno

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Types of errors

LevelNumber of errors
ERROR27
WARN94
INFO29

Error breakdown

RuleNumber of errors
duplicate_definition6
duplicate_label1
misused_obsolete_label16
multiple_labels4
annotation_whitespace2
duplicate_label_synonym2
equivalent_class_axiom_no_genus1
invalid_xref6
missing_definition83
lowercase_definition11
missing_superclass18

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Row Level Rule Name Subject Property Value
1 ERROR duplicate_definition GENO:0000847 IAO:0000115 A relation used to describe an environment contextualizing the identity of an entity.
2 ERROR duplicate_definition GENO:0000873 IAO:0000115 A relation used to describe an environment contextualizing the identity of an entity.
3 ERROR duplicate_definition GENO:0000846 IAO:0000115 A relation used to describe a process contextualizing the identity of an entity.
4 ERROR duplicate_definition GENO:0000874 IAO:0000115 A relation used to describe a process contextualizing the identity of an entity.
5 ERROR duplicate_definition GENO:0000719 IAO:0000115 A genotype that describes the total variation in heritable genomic sequence of a cell or organism, typically in terms of alterations from some reference or background genotype.
6 ERROR duplicate_definition GENO:0000899 IAO:0000115 A genotype that describes the total variation in heritable genomic sequence of a cell or organism, typically in terms of alterations from some reference or background genotype.
7 ERROR duplicate_label GENO:0000152 rdfs:label reference
8 ERROR misused_obsolete_label GENO:0000242 rdfs:label obsolete_specifies
9 ERROR misused_obsolete_label GENO:0000243 rdfs:label obsolete_approximates_sequence
10 ERROR misused_obsolete_label GENO:0000244 rdfs:label obsolete_resolves_to_sequence
11 ERROR misused_obsolete_label GENO:0000253 rdfs:label obsolete_is_specified_by
12 ERROR misused_obsolete_label GENO:0000359 rdfs:label obsolete_is_phenotype_of_genotype
13 ERROR misused_obsolete_label GENO:0000368 rdfs:label obsolete_participates_in_inheritance_process
14 ERROR misused_obsolete_label GENO:0000410 rdfs:label obsolete_is_genetic_variant_of
15 ERROR misused_obsolete_label GENO:0000411 rdfs:label obsolete_has_genetic_variant
16 ERROR misused_obsolete_label GENO:0000486 rdfs:label obsolete_is_variant_with@en
17 ERROR misused_obsolete_label GENO:0000488 rdfs:label obsolete_is_expression_variant_with@en
18 ERROR misused_obsolete_label GENO:0000712 rdfs:label ObsoleteDataProperty@en
19 ERROR misused_obsolete_label GENO:0000741 rdfs:label obsolete_has_regulatory_part@en
20 ERROR misused_obsolete_label GENO:0000742 rdfs:label obsolete_is_alteration_within@en
21 ERROR misused_obsolete_label GENO:0000767 rdfs:label obsolete_has_position_component@en
22 ERROR misused_obsolete_label GENO:0000910 rdfs:label obsolete reporter role@en
23 ERROR misused_obsolete_label GENO:0000911 rdfs:label obsolete selectable marker role@en
24 ERROR multiple_labels GENO:0000910 rdfs:label obsolete reporter role@en
25 ERROR multiple_labels GENO:0000910 rdfs:label reporter@en
26 ERROR multiple_labels GENO:0000911 rdfs:label obsolete selectable marker role@en
27 ERROR multiple_labels GENO:0000911 rdfs:label selectable marker@en
28 WARN annotation_whitespace GENO:0000243 IAO:0000116 Created subproperties 'approximates_sequence' and 'resolves to sequence'. Genotypes and other sequence variant artifacts are not always expected to completely specify a sequence, but rather provide some approximation based on available knowledge. The 'resolves_to_sequence' property can be used when the sequence variant artifact is able to completely resolve a sequence, and the 'approximates_sequence' property can be used when it does not.
29 WARN annotation_whitespace GENO:0000244 IAO:0000116 Created subproperties 'approximates_sequence' and 'resolves to sequence'. Genotypes and other sequence variant artifacts are not always expected to completely specify a sequence, but rather provide some approximation based on available knowledge. The 'resolves_to_sequence' property can be used when the sequence variant artifact is able to completely resolve a sequence, and the 'approximates_sequence' property can be used when it does not.
30 WARN duplicate_label_synonym GENO:0000017 IAO:0000118 reference sequence
31 WARN duplicate_label_synonym GENO:0000501 IAO:0000118 wild-type allele
32 WARN equivalent_class_axiom_no_genus GENO:0000960 GENO:0000251 GENO:0000481
33 WARN invalid_xref GENO:0000010 oboInOwl:hasDbXref OBI:genetic population background information
34 WARN invalid_xref GENO:0000014 oboInOwl:hasDbXref SO:0001023 ! allele
35 WARN invalid_xref GENO:0000019 oboInOwl:hasDbXref perhaps not same as SO:sequence collection, as here we explicitly include features that can have an extent of zero (and SO:sequence collection is a collection of regions that have an extent of at least one)
36 WARN invalid_xref GENO:0000033 oboInOwl:hasDbXref SO:0001506 ! variant_genome (definition of SO term here is too vague to know if has same meaning as GENO class here)
37 WARN invalid_xref GENO:0000666 oboInOwl:hasDbXref SO:0000831 (gene member region)
38 WARN invalid_xref GENO:0000870 oboInOwl:hasDbXref SO:0001260 ! sequence_collection
39 WARN missing_definition GENO:0000092 IAO:0000115
40 WARN missing_definition GENO:0000113 IAO:0000115
41 WARN missing_definition GENO:0000118 IAO:0000115
42 WARN missing_definition GENO:0000119 IAO:0000115
43 WARN missing_definition GENO:0000134 IAO:0000115
44 WARN missing_definition GENO:0000135 IAO:0000115
45 WARN missing_definition GENO:0000136 IAO:0000115
46 WARN missing_definition GENO:0000137 IAO:0000115
47 WARN missing_definition GENO:0000139 IAO:0000115
48 WARN missing_definition GENO:0000140 IAO:0000115
49 WARN missing_definition GENO:0000160 IAO:0000115
50 WARN missing_definition GENO:0000220 IAO:0000115
51 WARN missing_definition GENO:0000243 IAO:0000115
52 WARN missing_definition GENO:0000244 IAO:0000115
53 WARN missing_definition GENO:0000251 IAO:0000115
54 WARN missing_definition GENO:0000252 IAO:0000115
55 WARN missing_definition GENO:0000253 IAO:0000115
56 WARN missing_definition GENO:0000351 IAO:0000115
57 WARN missing_definition GENO:0000383 IAO:0000115
58 WARN missing_definition GENO:0000387 IAO:0000115
59 WARN missing_definition GENO:0000391 IAO:0000115
60 WARN missing_definition GENO:0000392 IAO:0000115
61 WARN missing_definition GENO:0000393 IAO:0000115
62 WARN missing_definition GENO:0000394 IAO:0000115
63 WARN missing_definition GENO:0000458 IAO:0000115
64 WARN missing_definition GENO:0000495 IAO:0000115
65 WARN missing_definition GENO:0000502 IAO:0000115
66 WARN missing_definition GENO:0000533 IAO:0000115
67 WARN missing_definition GENO:0000575 IAO:0000115
68 WARN missing_definition GENO:0000604 IAO:0000115
69 WARN missing_definition GENO:0000605 IAO:0000115
70 WARN missing_definition GENO:0000606 IAO:0000115
71 WARN missing_definition GENO:0000616 IAO:0000115
72 WARN missing_definition GENO:0000618 IAO:0000115
73 WARN missing_definition GENO:0000619 IAO:0000115
74 WARN missing_definition GENO:0000620 IAO:0000115
75 WARN missing_definition GENO:0000621 IAO:0000115
76 WARN missing_definition GENO:0000622 IAO:0000115
77 WARN missing_definition GENO:0000623 IAO:0000115
78 WARN missing_definition GENO:0000624 IAO:0000115
79 WARN missing_definition GENO:0000625 IAO:0000115
80 WARN missing_definition GENO:0000626 IAO:0000115
81 WARN missing_definition GENO:0000632 IAO:0000115
82 WARN missing_definition GENO:0000633 IAO:0000115
83 WARN missing_definition GENO:0000640 IAO:0000115
84 WARN missing_definition GENO:0000650 IAO:0000115
85 WARN missing_definition GENO:0000651 IAO:0000115
86 WARN missing_definition GENO:0000655 IAO:0000115
87 WARN missing_definition GENO:0000708 IAO:0000115
88 WARN missing_definition GENO:0000712 IAO:0000115
89 WARN missing_definition GENO:0000720 IAO:0000115
90 WARN missing_definition GENO:0000721 IAO:0000115
91 WARN missing_definition GENO:0000722 IAO:0000115
92 WARN missing_definition GENO:0000740 IAO:0000115
93 WARN missing_definition GENO:0000741 IAO:0000115
94 WARN missing_definition GENO:0000743 IAO:0000115
95 WARN missing_definition GENO:0000761 IAO:0000115
96 WARN missing_definition GENO:0000770 IAO:0000115
97 WARN missing_definition GENO:0000779 IAO:0000115
98 WARN missing_definition GENO:0000780 IAO:0000115
99 WARN missing_definition GENO:0000781 IAO:0000115
100 WARN missing_definition GENO:0000782 IAO:0000115
101 WARN missing_definition GENO:0000790 IAO:0000115
102 WARN missing_definition GENO:0000791 IAO:0000115
103 WARN missing_definition GENO:0000793 IAO:0000115
104 WARN missing_definition GENO:0000794 IAO:0000115
105 WARN missing_definition GENO:0000833 IAO:0000115
106 WARN missing_definition GENO:0000839 IAO:0000115
107 WARN missing_definition GENO:0000840 IAO:0000115
108 WARN missing_definition GENO:0000841 IAO:0000115
109 WARN missing_definition GENO:0000843 IAO:0000115
110 WARN missing_definition GENO:0000844 IAO:0000115
111 WARN missing_definition GENO:0000845 IAO:0000115
112 WARN missing_definition GENO:0000849 IAO:0000115
113 WARN missing_definition GENO:0000867 IAO:0000115
114 WARN missing_definition GENO:0000887 IAO:0000115
115 WARN missing_definition GENO:0000905 IAO:0000115
116 WARN missing_definition GENO:0000906 IAO:0000115
117 WARN missing_definition GENO:0000909 IAO:0000115
118 WARN missing_definition GENO:0000910 IAO:0000115
119 WARN missing_definition GENO:0000911 IAO:0000115
120 WARN missing_definition GENO:0000912 IAO:0000115
121 WARN missing_definition GENO:0000964 IAO:0000115
122 INFO lowercase_definition GENO:0000019 IAO:0000115 a collection more than one sequence features (ie a collection of discontinuous sequence features)
123 INFO lowercase_definition GENO:0000111 IAO:0000115 a population of homo sapiens grouped together in virtue of their sharing some commonality (either an inherent attribute or an externally assigned role)
124 INFO lowercase_definition GENO:0000125 IAO:0000115 sequence attribute that can inhere only in a collection of more than one sequence features
125 INFO lowercase_definition GENO:0000142 IAO:0000115 disposition inhering in a genetic locus variant that is realized in its inheritance by some offspring such that at least a partial variant-associated phenotype is apparent in heterozygotes
126 INFO lowercase_definition GENO:0000359 IAO:0000115 shortcut relation used to link a phenotype directly to a genotype of an organism
127 INFO lowercase_definition GENO:0000513 IAO:0000115 a sequence attribute of a chromosome or chromosomal region that has been abnormally duplicated or lost, as the result of a non-disjunction event or unbalanced translocation.
128 INFO lowercase_definition GENO:0000602 IAO:0000115 an allelic state where a single allele exists at a particular location in the organellar genome (mitochondrial or plastid) of a cell/organism.
129 INFO lowercase_definition GENO:0000603 IAO:0000115 an allelic state where more than one type of allele exists at a particular location in the organellar genome (mitochondrial or plastid) of a cell/organism.
130 INFO lowercase_definition GENO:0000608 IAO:0000115 a relation to link a single locus complement to its zygosity.
131 INFO lowercase_definition GENO:0000634 IAO:0000115 relation between an molecular agent and its molecular target
132 INFO lowercase_definition GENO:0000883 IAO:0000115 a quality inhering in a feature in virtue of its presence only in the genome of gametes (germ cells).
133 INFO missing_superclass GENO:0000009 rdfs:subClassOf
134 INFO missing_superclass GENO:0000017 rdfs:subClassOf
135 INFO missing_superclass GENO:0000030 rdfs:subClassOf
136 INFO missing_superclass GENO:0000036 rdfs:subClassOf
137 INFO missing_superclass GENO:0000047 rdfs:subClassOf
138 INFO missing_superclass GENO:0000054 rdfs:subClassOf
139 INFO missing_superclass GENO:0000057 rdfs:subClassOf
140 INFO missing_superclass GENO:0000460 rdfs:subClassOf
141 INFO missing_superclass GENO:0000494 rdfs:subClassOf
142 INFO missing_superclass GENO:0000512 rdfs:subClassOf
143 INFO missing_superclass GENO:0000666 rdfs:subClassOf
144 INFO missing_superclass GENO:0000720 rdfs:subClassOf
145 INFO missing_superclass GENO:0000721 rdfs:subClassOf
146 INFO missing_superclass GENO:0000722 rdfs:subClassOf
147 INFO missing_superclass GENO:0000777 rdfs:subClassOf
148 INFO missing_superclass GENO:0000779 rdfs:subClassOf
149 INFO missing_superclass GENO:0000823 rdfs:subClassOf
150 INFO missing_superclass GENO:0000885 rdfs:subClassOf