ROBOT Report - ino

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Types of errors

Error breakdown

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Row	Level	Rule Name	Subject	Property	Value
1	ERROR	duplicate_definition	INO:0000072	IAO:0000115	a regulation of transcription by binding to promoter that is further classified as a positive regulation
2	ERROR	duplicate_definition	INO:0000074	IAO:0000115	a regulation of transcription by binding to promoter that is further classified as a positive regulation
3	ERROR	duplicate_definition	INO:0000042	IAO:0000115	a negative regulation process that down-regulates gene expression level
4	ERROR	duplicate_definition	INO:0000095	IAO:0000115	a negative regulation process that down-regulates gene expression level
5	ERROR	duplicate_label	INO:0000109	rdfs:label	macrophage-pathogen interaction@en
6	ERROR	duplicate_label	INO:0000146	rdfs:label	macrophage-pathogen interaction@en
7	ERROR	missing_ontology_license	http://purl.obolibrary.org/obo/ino.owl	dc:license
8	ERROR	misused_obsolete_label	INO:0000159	rdfs:label	obsolete class@en
9	WARN	annotation_whitespace	INO:0000002	IAO:0000115	Interaction is a processual entity that has two or more participants (i.e., interactors) that have an effect upon one another. @en
10	WARN	annotation_whitespace	INO:0000003	IAO:0000115	an interaction network that includes at least two interactions and has a start point(s) and an end point(s).
11	WARN	annotation_whitespace	INO:0000006	IAO:0000115	an annotation property that lists keyword(s) useful for literature tagging and retrieval of sentences containing the type (or kind) of entity (e.g., interaction) as shown by the ontology term label and definition.
12	WARN	annotation_whitespace	INO:0000014	IAO:0000115	an edge is an object that represents a graphic line that links two interactors in an interaction.
13	WARN	annotation_whitespace	INO:0000018	IAO:0000115	a biological interaction that occurs in the organism level.
14	WARN	annotation_whitespace	INO:0000018	IAO:0000116	Examples: a bacterium interacts with a mouse, a cat interacts with a dog
15	WARN	annotation_whitespace	INO:0000019	IAO:0000115	A two-way interaction is an interaction that includes two different directions among two interactors.
16	WARN	annotation_whitespace	INO:0000024	IAO:0000115	a positive regulation that one interactor activates another.
17	WARN	annotation_whitespace	INO:0000030	IAO:0000115	an interaction that involves a gene and its environment (e.g., calcium in blood).
18	WARN	annotation_whitespace	INO:0000033	IAO:0000115	a negative regulation that attenuates the virulence of a pathogenic microbe.
19	WARN	annotation_whitespace	INO:0000035	IAO:0000115	a phosphorylation process that adds a phosphate to a protein kinase (possibly affecting its activity) by virtue of its own enzymic activity.
20	WARN	annotation_whitespace	INO:0000045	IAO:0000115	a gene expression process that results in protein production from a gene DNA sequence.
21	WARN	annotation_whitespace	INO:0000050	IAO:0000115	an indirect association that one interactor competes with another interactor in a specfiic process.
22	WARN	annotation_whitespace	INO:0000056	IAO:0000115	a gene expression that has decreased volume.
23	WARN	annotation_whitespace	INO:0000058	IAO:0000115	a direct physical association that one interactor is converted from another interactor.
24	WARN	annotation_whitespace	INO:0000059	IAO:0000115	an indirect association that one interactor cooperates with another interactor in a specfiic process.
25	WARN	annotation_whitespace	INO:0000061	IAO:0000115	an indirect association that two interactors are correlated in a process without defined influence of each other.
26	WARN	annotation_whitespace	INO:0000068	IAO:0000115	a regulation in which one interactor has a negative effect on another interactor
27	WARN	annotation_whitespace	INO:0000068	IAO:0000116	YH: different types of negative regulations exist. These types are related to different qualities and phenotyes of regulated targets.
28	WARN	annotation_whitespace	INO:0000073	IAO:0000115	a negative regulation that results in the decrease of one interactor volume.
29	WARN	annotation_whitespace	INO:0000076	IAO:0000115	an enzymatic reaction that leads to the breakdown of a biochemical entity.
30	WARN	annotation_whitespace	INO:0000084	IAO:0000115	a negative regulation that results in a destabilization.
31	WARN	annotation_whitespace	INO:0000086	IAO:0000115	a regulation that one interactor has a dominant effect on the quality of another interactor. This differs from the accessory regulation.
32	WARN	annotation_whitespace	INO:0000088	IAO:0000115	a protein complex assembly that involves two proteins that form a dimer.
33	WARN	annotation_whitespace	INO:0000089	IAO:0000115	a regulation process that involves in two interactors co-regulate a third interactor.
34	WARN	annotation_whitespace	INO:0000096	IAO:0000116	"YH: For example, \""IL-2 and IL-15 induced the production of IL-17 and IFN-γ in a dose dependent manner by PBMCs.” "
35	WARN	annotation_whitespace	INO:0000102	IAO:0000115	a biological interaction that uses the information from a gene to synthesize a functional gene product.
36	WARN	annotation_whitespace	INO:0000103	IAO:0000115	a positive regulation that one interactor facilitates a phenomenon such as a phenotype. This is an accessory effect not a major one.
37	WARN	annotation_whitespace	INO:0000111	IAO:0000115	a protein dimerization where two proteins are different.
38	WARN	annotation_whitespace	INO:0000112	IAO:0000115	a protein dimerization where two proteins are the same.
39	WARN	annotation_whitespace	INO:0000114	IAO:0000115	a gene expression that has increased volume.
40	WARN	annotation_whitespace	INO:0000117	IAO:0000116	YH: different types of positive regulations exist. These types are related to different qualities and phenotyes of regulated targets.
41	WARN	annotation_whitespace	INO:0000122	IAO:0000115	a positive regulation that leads to the induction of a new interactor due to the presence of another interactor.
42	WARN	annotation_whitespace	INO:0000126	IAO:0000115	a negative regulation that one interactor interferes a process.
43	WARN	annotation_whitespace	INO:0000140	IAO:0000115	a biochemical reaction that one interactor neutrolizes another.
44	WARN	annotation_whitespace	INO:0000148	IAO:0000115	an indirect association that one interactor is preceded by another interactor.
45	WARN	annotation_whitespace	INO:0000155	IAO:0000115	a positive regulation that leads the recruitment of one interactor from one location to another.
46	WARN	annotation_whitespace	INO:0000157	IAO:0000115	A regulation represents a regulatory interaction between two interactors.
47	WARN	annotation_whitespace	INO:0000165	IAO:0000115	a postive interaction that one interactor increases the stability of another interactor.
48	WARN	annotation_whitespace	INO:0000174	IAO:0000115	a cell-cell interaction that transfers viral, bacterial, or both bacterial and viral DNA from one cell to another using a bacteriophage vector.
49	WARN	annotation_whitespace	INO:0000231	IAO:0000116	a correlation association that two genes are co-expressed in a system.
50	WARN	annotation_whitespace	INO:0000234	IAO:0000115	a negative regulation that results in the deregulation of one interactor on a process.
51	WARN	annotation_whitespace	INO:0000311	IAO:0000115	an interaction between two proteins.
52	WARN	duplicate_exact_synonym	INO:0000067	IAO:0000118	negative protein activity regulation
53	WARN	duplicate_exact_synonym	INO:0000104	IAO:0000118	negative protein activity regulation
54	WARN	duplicate_label_synonym	INO:0000114	IAO:0000118	overexpression
55	WARN	equivalent_class_axiom_no_genus	INO:0000008	RO:0000087	INO:0000005
56	WARN	equivalent_class_axiom_no_genus	INO:0000016	RO:0000087	INO:0000015
57	WARN	equivalent_class_axiom_no_genus	INO:0000017	RO:0000087	INO:0000011
58	WARN	equivalent_class_axiom_no_genus	INO:0000032	RO:0002211	INO:0000173
59	WARN	equivalent_class_axiom_no_genus	INO:0000034	RO:0002211	INO:0000045
60	WARN	equivalent_class_axiom_no_genus	INO:0000038	RO:0002213	INO:0000102
61	WARN	equivalent_class_axiom_no_genus	INO:0000039	RO:0002212	INO:0000102
62	WARN	equivalent_class_axiom_no_genus	INO:0000042	RO:0002212	INO:0000173
63	WARN	equivalent_class_axiom_no_genus	INO:0000043	RO:0002212	INO:0000045
64	WARN	equivalent_class_axiom_no_genus	INO:0000044	RO:0002211	INO:0000102
65	WARN	equivalent_class_axiom_no_genus	INO:0000047	RO:0000087	INO:0000069
66	WARN	equivalent_class_axiom_no_genus	INO:0000049	RO:0002213	INO:0000173
67	WARN	equivalent_class_axiom_no_genus	INO:0000053	RO:0002213	INO:0000045
68	WARN	equivalent_class_axiom_no_genus	INO:0000125	RO:0000087	INO:0000009
69	WARN	equivalent_class_axiom_no_genus	INO:0000141	RO:0000087	INO:0000134
70	WARN	equivalent_class_axiom_no_genus	INO:0000144	RO:0000087	INO:0000137
71	WARN	equivalent_class_axiom_no_genus	INO:0000151	RO:0000087	INO:0000010
72	WARN	missing_definition	INO:0000036	IAO:0000115
73	WARN	missing_definition	INO:0000041	IAO:0000115
74	WARN	missing_definition	INO:0000062	IAO:0000115
75	WARN	missing_definition	INO:0000066	IAO:0000115
76	WARN	missing_definition	INO:0000080	IAO:0000115
77	WARN	missing_definition	INO:0000082	IAO:0000115
78	WARN	missing_definition	INO:0000083	IAO:0000115
79	WARN	missing_definition	INO:0000090	IAO:0000115
80	WARN	missing_definition	INO:0000092	IAO:0000115
81	WARN	missing_definition	INO:0000110	IAO:0000115
82	WARN	missing_definition	INO:0000115	IAO:0000115
83	WARN	missing_definition	INO:0000117	IAO:0000115
84	WARN	missing_definition	INO:0000121	IAO:0000115
85	WARN	missing_definition	INO:0000123	IAO:0000115
86	WARN	missing_definition	INO:0000127	IAO:0000115
87	WARN	missing_definition	INO:0000128	IAO:0000115
88	WARN	missing_definition	INO:0000131	IAO:0000115
89	WARN	missing_definition	INO:0000132	IAO:0000115
90	WARN	missing_definition	INO:0000136	IAO:0000115
91	WARN	missing_definition	INO:0000139	IAO:0000115
92	WARN	missing_definition	INO:0000142	IAO:0000115
93	WARN	missing_definition	INO:0000149	IAO:0000115
94	WARN	missing_definition	INO:0000156	IAO:0000115
95	WARN	missing_definition	INO:0000159	IAO:0000115
96	WARN	missing_definition	INO:0000178	IAO:0000115
97	WARN	missing_definition	INO:0000231	IAO:0000115
98	INFO	lowercase_definition	INO:0000003	IAO:0000115	an interaction network that includes at least two interactions and has a start point(s) and an end point(s).
99	INFO	lowercase_definition	INO:0000004	IAO:0000115	an interaction network model that is represented by a probabilistic graphical model (a type of statistical model) that represents a set of random variables and their conditional dependencies via a directed acyclic graph (DAG).
100	INFO	lowercase_definition	INO:0000005	IAO:0000115	an regulator role that is borne by a material entity that regulates an interaction.
101	INFO	lowercase_definition	INO:0000006	IAO:0000115	an annotation property that lists keyword(s) useful for literature tagging and retrieval of sentences containing the type (or kind) of entity (e.g., interaction) as shown by the ontology term label and definition.
102	INFO	lowercase_definition	INO:0000007	IAO:0000115	a positive regulation that one interactor up-regulates another.
103	INFO	lowercase_definition	INO:0000008	IAO:0000115	an interactor that regulates an interaction.
104	INFO	lowercase_definition	INO:0000009	IAO:0000115	an interactor role that is borne by a material entity that acts as an input of an interaction.
105	INFO	lowercase_definition	INO:0000010	IAO:0000115	an interactor role that is borne by a material entity that acts as an output of an interaction.
106	INFO	lowercase_definition	INO:0000011	IAO:0000115	a positive regulator role that is borne by a material entity that activates an interaction.
107	INFO	lowercase_definition	INO:0000012	IAO:0000115	an interaction network model that is represented by at least two mutual information interactions.
108	INFO	lowercase_definition	INO:0000013	IAO:0000115	a node is an object that represents an interactor in a graph of an interaction or interaction network.
109	INFO	lowercase_definition	INO:0000014	IAO:0000115	an edge is an object that represents a graphic line that links two interactors in an interaction.
110	INFO	lowercase_definition	INO:0000015	IAO:0000115	a role that is borne by a material entity to act as a participant in an interaction process.
111	INFO	lowercase_definition	INO:0000016	IAO:0000115	an interactor is a material entity that participates in an interaction.
112	INFO	lowercase_definition	INO:0000017	IAO:0000115	a positive interaction regulator that activates an interaction.
113	INFO	lowercase_definition	INO:0000018	IAO:0000115	a biological interaction that occurs in the organism level.
114	INFO	lowercase_definition	INO:0000020	IAO:0000115	an object property between an activation process and a material entity that acts as an activator during the process.
115	INFO	lowercase_definition	INO:0000021	IAO:0000115	a pathway that exists in human body.
116	INFO	lowercase_definition	INO:0000022	IAO:0000115	an up-regulation that one interactor up-regulates the secretion of another interactor.
117	INFO	lowercase_definition	INO:0000023	IAO:0000115	an interaction involving human molecules
118	INFO	lowercase_definition	INO:0000024	IAO:0000115	a positive regulation that one interactor activates another.
119	INFO	lowercase_definition	INO:0000025	IAO:0000115	an interaction that includes a gene and a cell as interactors.
120	INFO	lowercase_definition	INO:0000026	IAO:0000115	an activation process where one protein is activated by a material entity
121	INFO	lowercase_definition	INO:0000027	IAO:0000115	a biological interaction that involves two cells as interactors.
122	INFO	lowercase_definition	INO:0000028	IAO:0000115	an activation process where one protein is activated by a gene mutant
123	INFO	lowercase_definition	INO:0000029	IAO:0000115	a biochemical binding where a substance binds to the same site an agonist would bind to without causing activation of the receptor
124	INFO	lowercase_definition	INO:0000030	IAO:0000115	an interaction that involves a gene and its environment (e.g., calcium in blood).
125	INFO	lowercase_definition	INO:0000031	IAO:0000115	a regulation process that regulates the location of a protein
126	INFO	lowercase_definition	INO:0000032	IAO:0000115	a gene expression regulation process that involves the regulation of a gene transcription.
127	INFO	lowercase_definition	INO:0000033	IAO:0000115	a negative regulation that attenuates the virulence of a pathogenic microbe.
128	INFO	lowercase_definition	INO:0000034	IAO:0000115	a gene expression regulation process that involves the regulation of a protein translation process.
129	INFO	lowercase_definition	INO:0000035	IAO:0000115	a phosphorylation process that adds a phosphate to a protein kinase (possibly affecting its activity) by virtue of its own enzymic activity.
130	INFO	lowercase_definition	INO:0000037	IAO:0000115	a regulation process that regulates the activation of a gene so that the gene is expressed at a particular time
131	INFO	lowercase_definition	INO:0000038	IAO:0000115	a regulation process that positively regulates gene expression level
132	INFO	lowercase_definition	INO:0000039	IAO:0000115	a regulation process that negatively regulates gene expression level
133	INFO	lowercase_definition	INO:0000040	IAO:0000115	a human molecular reaction that is specifically a biochemical reaction
134	INFO	lowercase_definition	INO:0000042	IAO:0000115	a negative regulation process that down-regulates gene expression level
135	INFO	lowercase_definition	INO:0000043	IAO:0000115	a negative regulation process that down-regulates protein translation level
136	INFO	lowercase_definition	INO:0000044	IAO:0000115	a regulation process that regulates gene expression level
137	INFO	lowercase_definition	INO:0000045	IAO:0000115	a gene expression process that results in protein production from a gene DNA sequence.
138	INFO	lowercase_definition	INO:0000046	IAO:0000115	a negative regulation of gene transcription process that specifiies the negative regulation being an inhibition.
139	INFO	lowercase_definition	INO:0000047	IAO:0000115	an interactor that starts or speeds up a chemical reaction while undergoing no permanent change itself.
140	INFO	lowercase_definition	INO:0000048	IAO:0000115	a coprecipitation that occurs through an immunoprecipitation process.
141	INFO	lowercase_definition	INO:0000049	IAO:0000115	a regulation of transcription process that inviolves a positive regulation.
142	INFO	lowercase_definition	INO:0000050	IAO:0000115	an indirect association that one interactor competes with another interactor in a specfiic process.
143	INFO	lowercase_definition	INO:0000051	IAO:0000115	a positive regulation of gene transcription process that inviolves an activation of the gene transcription.
144	INFO	lowercase_definition	INO:0000052	IAO:0000115	an activation of gene transcription that is achieved by a low level of a protein
145	INFO	lowercase_definition	INO:0000053	IAO:0000115	a regulation of translation process that positively regulates protein translation level
146	INFO	lowercase_definition	INO:0000054	IAO:0000115	a direct interaction where an antigen interacts with an antibody physically.
147	INFO	lowercase_definition	INO:0000055	IAO:0000115	a regulation process that regulates an activity of a protein
148	INFO	lowercase_definition	INO:0000056	IAO:0000115	a gene expression that has decreased volume.
149	INFO	lowercase_definition	INO:0000057	IAO:0000115	a regulation that one interactor controls the quality of another interactor to a specific range
150	INFO	lowercase_definition	INO:0000058	IAO:0000115	a direct physical association that one interactor is converted from another interactor.
151	INFO	lowercase_definition	INO:0000059	IAO:0000115	an indirect association that one interactor cooperates with another interactor in a specfiic process.
152	INFO	lowercase_definition	INO:0000060	IAO:0000115	a colocalization that two interactors are precipitated together.
153	INFO	lowercase_definition	INO:0000061	IAO:0000115	an indirect association that two interactors are correlated in a process without defined influence of each other.
154	INFO	lowercase_definition	INO:0000063	IAO:0000115	an interaction that involves a cell and its environment as interactors
155	INFO	lowercase_definition	INO:0000064	IAO:0000115	an immuno-precipitation that one interactor is precipitated based on an cross- immunological precipitation process.
156	INFO	lowercase_definition	INO:0000065	IAO:0000115	an interaction that involves an organism and its environment as interactors
157	INFO	lowercase_definition	INO:0000067	IAO:0000115	a regulation of protein activitiy process that involves a negative regulation
158	INFO	lowercase_definition	INO:0000068	IAO:0000115	a regulation in which one interactor has a negative effect on another interactor
159	INFO	lowercase_definition	INO:0000069	IAO:0000115	an interactor role that is played by a material entity that starts or speeds up a chemical reaction while undergoing no permanent change itself.
160	INFO	lowercase_definition	INO:0000070	IAO:0000115	a negative regulation of protein activitiy process that involves an inhibition of a protein activity
161	INFO	lowercase_definition	INO:0000071	IAO:0000115	a regulation of transcription process that occurs through the binding to a promotor of a gene
162	INFO	lowercase_definition	INO:0000072	IAO:0000115	a regulation of transcription by binding to promoter that is further classified as a positive regulation
163	INFO	lowercase_definition	INO:0000073	IAO:0000115	a negative regulation that results in the decrease of one interactor volume.
164	INFO	lowercase_definition	INO:0000074	IAO:0000115	a regulation of transcription by binding to promoter that is further classified as a positive regulation
165	INFO	lowercase_definition	INO:0000075	IAO:0000115	a positive regulation of gene expression process that activates a gene so that the gene is expressed at a particular time
166	INFO	lowercase_definition	INO:0000076	IAO:0000115	an enzymatic reaction that leads to the breakdown of a biochemical entity.
167	INFO	lowercase_definition	INO:0000077	IAO:0000115	a regulation of transcription process where two or more regulators regulate a gene transcription
168	INFO	lowercase_definition	INO:0000078	IAO:0000115	an activation of gene transcription that is achieved by a high level of a protein
169	INFO	lowercase_definition	INO:0000079	IAO:0000115	a regulation of transcription process through binding to a promoter or regulating the promoter binding activity
170	INFO	lowercase_definition	INO:0000081	IAO:0000115	an activation of gene transcription that is achieved by a phosphorylated protein
171	INFO	lowercase_definition	INO:0000084	IAO:0000115	a negative regulation that results in a destabilization.
172	INFO	lowercase_definition	INO:0000085	IAO:0000115	a negative regulation process that inhibits gene expression level
173	INFO	lowercase_definition	INO:0000086	IAO:0000115	a regulation that one interactor has a dominant effect on the quality of another interactor. This differs from the accessory regulation.
174	INFO	lowercase_definition	INO:0000087	IAO:0000115	an annotation property that specifies the dependency pattern of the literature keywords that match to the ontology interaction type.
175	INFO	lowercase_definition	INO:0000088	IAO:0000115	a protein complex assembly that involves two proteins that form a dimer.
176	INFO	lowercase_definition	INO:0000089	IAO:0000115	a regulation process that involves in two interactors co-regulate a third interactor.
177	INFO	lowercase_definition	INO:0000091	IAO:0000115	a negative regulation that results in a disruption.
178	INFO	lowercase_definition	INO:0000093	IAO:0000115	a negative regulation that one interactor down-regulates another.
179	INFO	lowercase_definition	INO:0000094	IAO:0000115	a positive regulation of gene expression process that up-regulates gene expression level
180	INFO	lowercase_definition	INO:0000095	IAO:0000115	a negative regulation process that down-regulates gene expression level
181	INFO	lowercase_definition	INO:0000096	IAO:0000115	an induction that leads to the production of an entity
182	INFO	lowercase_definition	INO:0000097	IAO:0000115	a negative regulation that one interactor eliminates another.
183	INFO	lowercase_definition	INO:0000098	IAO:0000115	a cell-cell interaction that the transfers genetic material between bacterial cells by direct cell-to-cell contact or by a bridge-like connection between two cells.
184	INFO	lowercase_definition	INO:0000100	IAO:0000115	a regulation process where one gene product regulates an assembly process which forms an assembly having another gene product.
185	INFO	lowercase_definition	INO:0000101	IAO:0000115	a human molecular interaction where one molecule controls another molecule.
186	INFO	lowercase_definition	INO:0000102	IAO:0000115	a biological interaction that uses the information from a gene to synthesize a functional gene product.
187	INFO	lowercase_definition	INO:0000103	IAO:0000115	a positive regulation that one interactor facilitates a phenomenon such as a phenotype. This is an accessory effect not a major one.
188	INFO	lowercase_definition	INO:0000104	IAO:0000115	a regulation of protein activitiy process that involves a positive regulation
189	INFO	lowercase_definition	INO:0000106	IAO:0000115	a genetic interaction that forms a hybrid gene formed from two previously separate genes. It can occur as the result of a translocation, interstitial deletion, or chromosomal inversion.
190	INFO	lowercase_definition	INO:0000108	IAO:0000115	an induction that is achieved by binding to a protein
191	INFO	lowercase_definition	INO:0000111	IAO:0000115	a protein dimerization where two proteins are different.
192	INFO	lowercase_definition	INO:0000112	IAO:0000115	a protein dimerization where two proteins are the same.
193	INFO	lowercase_definition	INO:0000114	IAO:0000115	a gene expression that has increased volume.
194	INFO	lowercase_definition	INO:0000116	IAO:0000115	a translocation that one interactor is precipitated based on an immunological precipitation process.
195	INFO	lowercase_definition	INO:0000119	IAO:0000115	a negative regulation that one interactor inactivates another.
196	INFO	lowercase_definition	INO:0000120	IAO:0000115	a positive regulation that leads to the increase of a quality of an entity.
197	INFO	lowercase_definition	INO:0000122	IAO:0000115	a positive regulation that leads to the induction of a new interactor due to the presence of another interactor.
198	INFO	lowercase_definition	INO:0000124	IAO:0000115	a negative regulation that one interactor inhibites another.
199	INFO	lowercase_definition	INO:0000125	IAO:0000115	an interactor that is an input of an interaction.
200	INFO	lowercase_definition	INO:0000126	IAO:0000115	a negative regulation that one interactor interferes a process.